The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP007216	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1927, complete genome	4695514	1225017	1271653	4695514	integrase,head,tail,lysis	Salmonella_phage(27.91%)	59	1222750:1222764	1257902:1257916
1222750:1222764	attL	GGGCGTGGCGGCGTG	NA	NA	NA	NA
AJQ70713.1|1225017_1226247_+|integrase	integrase	integrase	H6WRW7	Salmonella_phage	94.1	6.4e-233
AWH56070.1|1226224_1226509_-	excisionase	NA	H6WRW8	Salmonella_phage	87.2	1.1e-42
AWH56071.1|1226549_1226789_-	DUF4060 domain-containing protein	NA	H6WRW9	Salmonella_phage	97.5	2.2e-36
AJQ70712.2|1226831_1227989_-	enterohemolysin	NA	S4TTE8	Salmonella_phage	100.0	1.6e-217
AJQ70711.1|1227951_1231131_-	DNA breaking-rejoining protein	NA	H6WRX1	Salmonella_phage	68.1	0.0e+00
AJQ70710.1|1231271_1231607_-	hypothetical protein	NA	NA	NA	NA	NA
AJQ70709.2|1231682_1231889_-	cell division inhibitor protein	NA	I6PBM9	Cronobacter_phage	45.6	3.0e-10
AJQ70708.2|1231893_1232169_-	hypothetical protein	NA	NA	NA	NA	NA
AWH56072.1|1232429_1232609_+	hypothetical protein	NA	NA	NA	NA	NA
AWH56073.1|1232553_1232742_-	hypothetical protein	NA	NA	NA	NA	NA
AWH56074.1|1233052_1233478_-	transcriptional regulator	NA	K7PH71	Enterobacterial_phage	56.3	1.2e-13
AWH56075.1|1233574_1233829_+	XRE family transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	59.4	1.2e-16
AJQ70706.1|1233815_1234310_+	hypothetical protein	NA	NA	NA	NA	NA
AJQ70705.1|1234356_1235364_+	DUF1376 domain-containing protein	NA	A0A0U2RT81	Escherichia_phage	67.5	7.6e-123
AJQ70704.2|1235356_1235818_+	replication protein	NA	A0A0U2JGJ0	Escherichia_phage	74.8	7.8e-67
AWH56076.1|1235832_1236228_+	DUF977 domain-containing protein	NA	A0A088CBK9	Shigella_phage	38.1	1.7e-17
AJQ70703.2|1236514_1237645_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AJQ70702.2|1238041_1240021_+	hypothetical protein	NA	A0A2P0VMX1	Tetraselmis_virus	46.3	1.9e-162
AWH56077.1|1240038_1240230_-	hypothetical protein	NA	NA	NA	NA	NA
AJQ70701.2|1240652_1240958_+	hypothetical protein	NA	NA	NA	NA	NA
AJQ70700.1|1241021_1241621_+	DUF1367 domain-containing protein	NA	A0A0U2RT94	Escherichia_phage	82.9	1.2e-96
AJQ70699.1|1241617_1241812_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	61.5	6.1e-13
AJQ70698.2|1241793_1242090_+	hypothetical protein	NA	K7P7Q1	Enterobacteria_phage	79.8	1.1e-34
AJQ70697.1|1242086_1242641_+	DUF1133 domain-containing protein	NA	A0A0U2S606	Escherichia_phage	64.6	1.7e-63
AWH56078.1|1242586_1242784_-	hypothetical protein	NA	NA	NA	NA	NA
AJQ70696.2|1242847_1243384_+	hypothetical protein	NA	NA	NA	NA	NA
AJQ70695.2|1243516_1243819_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AJQ70694.1|1243796_1244336_+	lysozyme	NA	K7PLY1	Enterobacteria_phage	71.2	5.7e-77
AJQ70692.1|1244436_1244901_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	81.7	6.3e-56
AJQ70691.2|1245108_1245291_+	hypothetical protein	NA	NA	NA	NA	NA
AJQ70690.2|1245320_1245563_+	DUF2514 domain-containing protein	NA	NA	NA	NA	NA
AWH56079.1|1245588_1246149_-	hypothetical protein	NA	NA	NA	NA	NA
AJQ70689.1|1246236_1246863_+	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	98.1	2.3e-106
AJQ70688.1|1246865_1248485_+	TerL protein	NA	A0A0M5M1R6	Salmonella_phage	81.4	3.9e-262
AJQ70687.1|1248484_1250005_+	DUF1073 domain-containing protein	NA	A0A2R3UAL5	Myoviridae_environmental_samples	43.3	1.2e-103
AJQ70686.1|1250045_1250735_+|head	phage head morphogenesis protein	head	H9C0V1	Aeromonas_phage	49.6	4.5e-58
AJQ70685.1|1250731_1252078_+	DUF2213 domain-containing protein	NA	A0A219YCD3	Aeromonas_phage	36.4	9.3e-68
AJQ70684.2|1252079_1252562_+	hypothetical protein	NA	K4HYQ5	Acinetobacter_phage	40.6	2.2e-19
AJQ70683.2|1252561_1253590_+	DUF2184 domain-containing protein	NA	A0A219YBB0	Aeromonas_phage	48.7	2.3e-82
AJQ70682.1|1253593_1253941_+	hypothetical protein	NA	H9C0V9	Aeromonas_phage	40.2	3.9e-10
AJQ70681.1|1253947_1254394_+	DUF4054 domain-containing protein	NA	A0A068CGG9	Acinetobacter_phage	40.6	2.3e-15
AJQ70680.1|1254387_1254972_+	hypothetical protein	NA	H9C0W2	Aeromonas_phage	30.3	2.1e-16
AJQ70679.1|1254968_1255334_+	hypothetical protein	NA	A0A077KAW7	Edwardsiella_phage	40.5	3.0e-21
AJQ70678.2|1255318_1255864_+	hypothetical protein	NA	NA	NA	NA	NA
AJQ70677.1|1255844_1257329_+	DUF3383 domain-containing protein	NA	A0A077KGV4	Edwardsiella_phage	41.0	5.2e-96
AJQ70676.1|1257329_1257776_+	hypothetical protein	NA	Q2NPD1	Xanthomonas_phage	40.4	4.8e-21
AJQ70675.1|1257775_1258180_+	hypothetical protein	NA	H9C0W7	Aeromonas_phage	44.8	1.8e-19
1257902:1257916	attR	GGGCGTGGCGGCGTG	NA	NA	NA	NA
AJQ70674.1|1258221_1258404_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
AJQ70673.1|1258387_1260559_+	transglycosylase	NA	A0A0M4REK7	Salmonella_phage	67.1	1.4e-49
AJQ70672.1|1260555_1261266_+	hypothetical protein	NA	A0A077KGW3	Edwardsiella_phage	34.3	4.7e-26
AWH56080.1|1261265_1261568_+	hypothetical protein	NA	A0A077K9U4	Edwardsiella_phage	49.5	7.0e-24
AJQ70670.1|1261564_1262434_+	hypothetical protein	NA	A0A077KC17	Edwardsiella_phage	32.7	9.1e-32
AJQ70669.1|1262414_1263092_+	oxidoreductase	NA	A0A077KAY0	Edwardsiella_phage	36.4	5.4e-32
AJQ70668.1|1263104_1263461_+	hypothetical protein	NA	A0A077KCA1	Edwardsiella_phage	49.1	1.6e-19
AJQ70667.1|1263457_1264699_+	hypothetical protein	NA	A0A077KGW9	Edwardsiella_phage	49.9	1.2e-101
AJQ70666.1|1264700_1265303_+	DUF2612 domain-containing protein	NA	A0A2R3UAM9	Myoviridae_environmental_samples	38.9	3.3e-33
AJQ70665.1|1265292_1266747_+	short-chain dehydrogenase	NA	A0A0M3ULF6	Salmonella_phage	74.5	2.2e-46
AJQ70664.1|1266746_1267325_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	92.6	6.3e-98
AJQ70663.2|1268287_1271653_+	DUF4765 domain-containing protein	NA	A0A0N7KZG3	Stx2-converting_phage	50.5	1.6e-310
>prophage 2
CP007216	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1927, complete genome	4695514	1739919	1749090	4695514	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
AJQ70226.1|1739919_1740867_+	ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
AJQ70225.1|1740850_1741582_+	ABC transporter permease	NA	NA	NA	NA	NA
AWH56107.1|1741562_1741670_-	hypothetical protein	NA	NA	NA	NA	NA
AJQ70224.1|1741729_1742461_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AJQ70223.2|1742683_1744369_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
AJQ70222.1|1744365_1745085_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AJQ70221.1|1745131_1745599_+	DUF1456 domain-containing protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
AJQ70220.2|1745655_1746186_-	DUF1307 domain-containing protein	NA	NA	NA	NA	NA
AJQ70219.1|1746357_1746816_-	lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AJQ70218.1|1747056_1749090_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
>prophage 3
CP007216	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1927, complete genome	4695514	1823588	1834095	4695514		Enterobacteria_phage(37.5%)	10	NA	NA
AJQ70152.1|1823588_1824992_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
AJQ70151.2|1825169_1826063_+	UTP--glucose-1-phosphate uridylyltransferase	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
AJQ70150.1|1826439_1827525_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.2e-102
AJQ70149.2|1827524_1828424_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	5.1e-30
AJQ70148.2|1828471_1829350_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.8	5.1e-107
AWH56112.1|1829350_1829902_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.0e-52
AJQ70147.1|1829907_1830888_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
AJQ70146.1|1830897_1831671_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
AJQ70145.1|1831675_1832755_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.3e-16
AJQ70144.1|1832781_1834095_+	LPS biosynthesis protein	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
>prophage 4
CP007216	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1927, complete genome	4695514	1927238	1934655	4695514		Morganella_phage(33.33%)	9	NA	NA
AJQ70045.1|1927238_1927763_-	peptidase	NA	G9L6C4	Escherichia_phage	77.7	1.3e-36
AWH56118.1|1928410_1928701_-	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	50.9	2.3e-08
AJQ70043.1|1929072_1929870_-	protein MtfA	NA	NA	NA	NA	NA
AJQ70042.1|1930350_1930512_+	hypothetical protein	NA	NA	NA	NA	NA
AWH56119.1|1930638_1931058_+	DNA polymerase V subunit UmuD	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
AJQ70040.1|1931060_1932329_+	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	91.7	1.3e-225
AJQ70039.1|1932783_1932996_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	5.1e-21
AWH56120.1|1932982_1933186_+	cold-shock protein	NA	NA	NA	NA	NA
AJQ70038.1|1933443_1934655_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	56.0	1.3e-108
>prophage 5
CP007216	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1927, complete genome	4695514	2027545	2081798	4695514	integrase,protease,transposase,tail	Enterobacteria_phage(25.0%)	57	2046065:2046080	2063539:2063554
AWH56126.1|2027545_2028801_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	34.5	4.8e-18
AJQ69927.1|2028935_2030378_-	pyruvate kinase II	NA	NA	NA	NA	NA
AJQ69926.1|2030501_2031371_-	transcriptional regulator HexR	NA	NA	NA	NA	NA
AWH56127.1|2031554_2031740_-	hypothetical protein	NA	NA	NA	NA	NA
AJQ69925.1|2031712_2033188_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	37.5	2.6e-79
AJQ69924.1|2033422_2035234_+	phosphogluconate dehydratase	NA	NA	NA	NA	NA
AJQ69923.1|2035271_2035913_+	keto-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
AJQ69922.1|2036012_2037191_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AJQ69921.1|2037321_2037612_+	damage-inducible protein YebG	NA	NA	NA	NA	NA
AJQ69920.1|2037679_2038033_+	hypothetical protein	NA	NA	NA	NA	NA
AJQ69919.1|2038126_2038786_+	DUF533 domain-containing protein	NA	NA	NA	NA	NA
AJQ69918.2|2038998_2041050_+	oligopeptidase B	NA	NA	NA	NA	NA
AJQ69917.1|2041084_2041783_-	exodeoxyribonuclease X	NA	Q6UAU3	Klebsiella_phage	40.4	2.8e-07
AJQ69916.1|2041806_2042463_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
AJQ69915.1|2042570_2042801_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
AJQ69914.2|2042938_2043313_+	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
AJQ69913.2|2043313_2044189_+	hypothetical protein	NA	NA	NA	NA	NA
AJQ69912.1|2044205_2044559_+	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
AWH56334.1|2044616_2044736_+	hypothetical protein	NA	NA	NA	NA	NA
AJQ69911.2|2044922_2045777_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	50.9	3.6e-73
AJQ69910.2|2045836_2046331_-	RecE	NA	A0A0U2I1R6	Escherichia_phage	68.9	8.2e-22
2046065:2046080	attL	CACTTCTTCTTTTTCA	NA	NA	NA	NA
AWH56128.1|2046520_2046751_+	lytic enzyme	NA	Q8HA86	Salmonella_phage	93.7	6.1e-28
AJQ69909.1|2046804_2047338_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	48.3	1.4e-11
AJQ69908.1|2047594_2047762_-	lytic enzyme	NA	NA	NA	NA	NA
AJQ69907.1|2047826_2048015_-	hypothetical protein	NA	NA	NA	NA	NA
AJQ69906.1|2048069_2048561_+	DUF1441 domain-containing protein	NA	Q9EYD0	Enterobacteria_phage	57.5	5.8e-44
AJQ69905.1|2049113_2051168_+	shikimate transporter	NA	E5G6P0	Salmonella_phage	47.5	1.3e-73
AWH56129.1|2051264_2051465_-	phage virulence factor	NA	NA	NA	NA	NA
AWH56130.1|2051655_2051772_-|tail	phage tail protein	tail	NA	NA	NA	NA
AJQ69904.1|2052034_2052160_+	arsenic transporter	NA	NA	NA	NA	NA
AWH56131.1|2052288_2052555_+	hypothetical protein	NA	NA	NA	NA	NA
AWH56132.1|2053307_2053922_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AJQ69901.2|2053931_2054090_-	hypothetical protein	NA	NA	NA	NA	NA
AJQ69900.1|2054222_2055137_-	protein PagO	NA	NA	NA	NA	NA
AJQ69897.2|2056510_2056807_+	DUF4113 domain-containing protein	NA	I6RSM4	Salmonella_phage	83.7	5.3e-16
AJQ69896.2|2057072_2057441_-|integrase	integrase	integrase	K7PHK0	Enterobacteria_phage	39.8	5.4e-18
AWH56133.1|2058904_2059045_-	hypothetical protein	NA	NA	NA	NA	NA
AWH56134.1|2059210_2059480_-	hypothetical protein	NA	Q6UAV5	Klebsiella_phage	39.0	1.5e-06
AJQ69892.1|2059526_2059721_+	hypothetical protein	NA	NA	NA	NA	NA
AJQ69891.1|2059849_2060269_+	N-acetyltransferase	NA	NA	NA	NA	NA
AJQ69886.2|2063341_2064355_-	acyltransferase	NA	NA	NA	NA	NA
2063539:2063554	attR	TGAAAAAGAAGAAGTG	NA	NA	NA	NA
AJQ69884.1|2065051_2065255_-	fimbrial protein	NA	NA	NA	NA	NA
AWH56135.1|2065438_2065723_-	hypothetical protein	NA	NA	NA	NA	NA
AJQ69882.1|2067238_2067715_-	hypothetical protein	NA	NA	NA	NA	NA
AJQ69881.1|2068043_2068439_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	32.8	7.0e-16
AWH56136.1|2069122_2069845_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
AJQ69877.1|2070129_2070294_+	hypothetical protein	NA	NA	NA	NA	NA
AJQ69875.2|2070517_2071168_+	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	50.9	9.4e-58
AJQ69874.2|2071186_2071378_-	DUF1482 domain-containing protein	NA	NA	NA	NA	NA
AJQ69873.1|2071488_2071728_-	DUF1480 domain-containing protein	NA	NA	NA	NA	NA
AJQ69872.2|2071842_2073282_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA	NA
AJQ69871.1|2073359_2075999_-	MCE family protein	NA	NA	NA	NA	NA
AJQ69870.1|2075961_2077245_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
AJQ69869.2|2077286_2077871_+	Free methionine-R-sulfoxide reductase	NA	NA	NA	NA	NA
AJQ69868.1|2077968_2078655_+	RNA chaperone ProQ	NA	NA	NA	NA	NA
AJQ69867.2|2078674_2080723_+|tail,protease	tail-specific protease	tail,protease	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
AJQ69866.1|2080916_2081798_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 6
CP007216	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1927, complete genome	4695514	2842303	2891338	4695514	protease,holin,integrase,tail	Salmonella_phage(41.67%)	52	2874497:2874511	2891373:2891387
AWH56197.1|2842303_2842984_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	72.4	1.6e-84
AJQ69092.1|2843603_2844263_+	transmembrane protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
AJQ69091.1|2844349_2844679_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
AJQ69090.1|2844675_2844957_-	acylphosphatase	NA	NA	NA	NA	NA
AJQ69089.2|2845005_2845785_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AJQ69088.1|2845810_2846359_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
AJQ69087.1|2846573_2847785_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA	NA
AJQ69086.1|2847842_2848160_+	heat-shock protein HspQ	NA	NA	NA	NA	NA
AJQ69085.1|2848204_2848621_-	CoA-binding protein	NA	NA	NA	NA	NA
AJQ69084.1|2848791_2849454_+	DUF2057 domain-containing protein	NA	NA	NA	NA	NA
AJQ69083.1|2849548_2850007_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AJQ69082.1|2850042_2852097_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	8.5e-20
AJQ69081.1|2852220_2852667_+	YccF domain-containing protein	NA	NA	NA	NA	NA
AJQ69080.1|2852685_2854839_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
AJQ69079.1|2854825_2855431_-	DNA transformation protein	NA	NA	NA	NA	NA
AJQ69078.1|2855647_2856157_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
AJQ69077.2|2856513_2857566_+	porin OmpA	NA	NA	NA	NA	NA
AJQ69076.1|2857637_2858090_-	macrodomain Ter protein	NA	NA	NA	NA	NA
AJQ69075.1|2858275_2860036_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
AJQ69074.1|2860104_2860623_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
AWH56198.1|2860722_2860890_-	ribosome modulation factor	NA	NA	NA	NA	NA
AJQ69072.2|2861145_2861709_-	hypothetical protein	NA	NA	NA	NA	NA
AJQ69071.1|2861705_2863346_-	paraquat-inducible protein B	NA	NA	NA	NA	NA
AJQ69070.2|2863350_2864604_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
AJQ69068.1|2864618_2866526_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	5.4e-53
AJQ69067.1|2866538_2868647_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA	NA
AJQ69066.1|2868745_2869855_+	hypothetical protein	NA	NA	NA	NA	NA
AJQ69065.1|2869851_2870394_-	cell division protein ZapC	NA	NA	NA	NA	NA
AJQ69064.1|2870559_2871570_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
AJQ69063.1|2871777_2874390_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.6	6.3e-20
2874497:2874511	attL	GCTACATTTTTATAA	NA	NA	NA	NA
AJQ69062.1|2874816_2875023_+	DNA-damage-inducible protein I	NA	S4TNM0	Salmonella_phage	100.0	1.8e-31
AJQ69061.1|2875498_2876299_+	hypothetical protein	NA	NA	NA	NA	NA
AJQ69059.2|2876778_2877501_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA	NA
AJQ69058.1|2877697_2878279_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.0	2.8e-93
AJQ69057.1|2878278_2879730_-	short-chain dehydrogenase	NA	E5G6P0	Salmonella_phage	72.8	1.7e-46
AJQ69056.1|2879719_2880322_-	DUF2612 domain-containing protein	NA	A0A2R3UAM9	Myoviridae_environmental_samples	38.9	3.3e-33
AJQ69055.1|2880323_2881565_-	hypothetical protein	NA	A0A077KGW9	Edwardsiella_phage	49.9	1.2e-101
AJQ69054.1|2881561_2881918_-	hypothetical protein	NA	A0A077KCA1	Edwardsiella_phage	49.1	1.6e-19
AJQ69053.1|2881930_2882608_-	oxidoreductase	NA	A0A077KAY0	Edwardsiella_phage	36.4	5.4e-32
AJQ69052.1|2882588_2883458_-	hypothetical protein	NA	A0A077KC17	Edwardsiella_phage	32.7	9.1e-32
AJQ69051.1|2883454_2883757_-	hypothetical protein	NA	A0A077K9U4	Edwardsiella_phage	49.5	7.0e-24
AJQ69050.2|2883756_2884467_-	hypothetical protein	NA	A0A077KGW3	Edwardsiella_phage	34.3	4.7e-26
AJQ69049.2|2884483_2884813_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
AJQ69048.2|2885088_2885775_+|protease	type III secretion system effector protease GogA	protease	Q9MBM2	Phage_Gifsy-1	99.1	1.4e-131
AWH56199.1|2885989_2886178_-	hypothetical protein	NA	NA	NA	NA	NA
AJQ69046.2|2886667_2887357_-	antiterminator	NA	I6PDF8	Cronobacter_phage	52.4	1.1e-59
AWH56200.1|2887353_2887494_-	hypothetical protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
AJQ69044.2|2887490_2888102_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	96.1	1.8e-90
AJQ69043.2|2888272_2889430_+	enterohemolysin	NA	S4TTE8	Salmonella_phage	100.0	1.6e-217
AWH56201.1|2889472_2889712_+	DUF4060 domain-containing protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
AWH56202.1|2889752_2890001_+	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
AJQ69041.2|2890045_2891338_+|integrase	integrase	integrase	S4TSP2	Salmonella_phage	99.8	2.2e-252
2891373:2891387	attR	GCTACATTTTTATAA	NA	NA	NA	NA
>prophage 7
CP007216	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1927, complete genome	4695514	2962833	2970146	4695514	integrase,protease	Ralstonia_phage(16.67%)	8	2957254:2957268	2968882:2968896
2957254:2957268	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
AJQ68981.2|2962833_2963211_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	40.2	1.7e-19
AWH56207.1|2963372_2963570_+	hypothetical protein	NA	NA	NA	NA	NA
AJQ68980.2|2963782_2966059_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
AJQ68979.1|2966089_2966410_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AJQ68978.1|2966733_2966955_+	cold shock domain protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AJQ68977.2|2966909_2967104_-	hypothetical protein	NA	NA	NA	NA	NA
AJQ68976.1|2967084_2969031_-	macrolide ABC transporter permease/ATP-binding protein MacB	NA	G9BWD6	Planktothrix_phage	43.1	2.0e-39
2968882:2968896	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
AJQ68975.1|2969027_2970146_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	39.8	8.1e-09
>prophage 8
CP007216	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1927, complete genome	4695514	4315065	4359839	4695514	tRNA,plate,tail	Burkholderia_phage(36.36%)	47	NA	NA
AJQ67686.1|4315065_4316064_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AJQ67685.1|4316151_4317462_-	conjugal transfer protein	NA	NA	NA	NA	NA
AJQ67684.1|4317708_4318224_+	transcriptional regulator Zur	NA	NA	NA	NA	NA
AJQ67683.2|4318323_4318533_-	CsbD family protein	NA	NA	NA	NA	NA
AJQ67682.2|4318554_4318668_-	hypothetical protein	NA	NA	NA	NA	NA
AJQ67681.1|4318664_4319990_-	MATE family efflux transporter	NA	NA	NA	NA	NA
AJQ67680.1|4320168_4320777_-	LexA repressor	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
AJQ67679.1|4320885_4321254_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AJQ67678.1|4321424_4323845_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA	NA
AJQ67677.1|4323943_4324816_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
AJQ67676.1|4324829_4325327_-	chorismate lyase	NA	NA	NA	NA	NA
AJQ67675.1|4325507_4326425_-	maltose operon protein MalM	NA	NA	NA	NA	NA
AJQ67674.1|4326588_4327947_-	maltoporin	NA	NA	NA	NA	NA
AJQ67673.1|4328035_4329145_-	maltose/maltodextrin import ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
AJQ67672.2|4329505_4330696_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
AJQ67671.1|4330827_4332372_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
AJQ67670.2|4332386_4333277_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
AJQ67669.1|4333442_4333853_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
AJQ67668.1|4333995_4336092_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
AJQ67667.1|4336091_4336829_-	hypothetical protein	NA	NA	NA	NA	NA
AJQ67666.1|4336825_4337464_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
AJQ67665.2|4337527_4337770_-	outer membrane protein	NA	NA	NA	NA	NA
AJQ67664.1|4338213_4339863_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AJQ67663.1|4340207_4341557_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
AJQ67662.1|4341687_4342014_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	3.5e-21
AJQ67659.1|4342611_4342899_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
AJQ67658.2|4342901_4343507_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	59.4	9.3e-60
AJQ67657.1|4343519_4343834_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
AJQ67656.1|4343993_4344419_+	hypothetical protein	NA	NA	NA	NA	NA
AJQ67655.1|4344444_4344642_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
AJQ67654.1|4344631_4346059_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.9	1.4e-194
AJQ67653.1|4346058_4346583_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
AJQ67652.1|4346634_4346952_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
AJQ67651.1|4346911_4347040_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
AJQ67650.1|4347136_4349488_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.3	3.4e-65
AJQ67649.1|4349487_4350441_+	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	2.3e-36
AJQ67648.1|4350440_4350650_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
AJQ67647.1|4350637_4351681_+	phage protein D	NA	A4JWL3	Burkholderia_virus	45.9	3.8e-77
AJQ67646.1|4351690_4352413_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
AJQ67644.2|4352740_4353103_+	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
AJQ67643.1|4353099_4354029_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	84.1	7.9e-151
AJQ67642.1|4354028_4355576_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	1.5e-48
AJQ67640.2|4355739_4356099_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
AJQ67639.1|4356089_4357205_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.2	1.8e-101
AJQ67638.1|4357197_4357830_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	6.6e-24
AJQ67637.1|4357832_4359314_+|tail	phage tail protein	tail	A0A0M3ULF6	Salmonella_phage	51.7	1.3e-51
AJQ67636.1|4359323_4359839_+|tail	tail fiber assembly protein	tail	A0A0U2QV64	Escherichia_phage	41.2	3.4e-34
