The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP007539	Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome	2810186	410207	528921	2810186	protease,tRNA,transposase,bacteriocin	Staphylococcus_phage(90.62%)	115	NA	NA
AHW67656.1|410207_411527_-|transposase	ISL3 family transposase IS1181	transposase	NA	NA	NA	NA
AHW68201.1|412019_413081_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
AHW66974.1|413338_414796_+	ABC transporter permease	NA	NA	NA	NA	NA
AHW67360.2|414782_415511_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
AHW68261.2|415646_416789_+	epoxyqueuosine reductase	NA	NA	NA	NA	NA
AHW68004.1|416793_417264_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
AHW65749.1|417422_418022_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
AHW67002.1|418046_418199_+	hypothetical protein	NA	NA	NA	NA	NA
AVC63514.1|418263_418470_-	hypothetical protein	NA	NA	NA	NA	NA
AVC63515.1|418494_418857_-	hypothetical protein	NA	NA	NA	NA	NA
AHW66758.1|418975_419371_+	hypothetical protein	NA	NA	NA	NA	NA
AHW67980.1|419566_420952_+	class II fumarate hydratase	NA	NA	NA	NA	NA
AHW66695.1|421414_422236_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
AHW67561.1|422398_423511_+	histidine kinase	NA	NA	NA	NA	NA
AHW68153.1|423532_424156_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AHW67430.1|424511_424976_+	transcriptional regulator	NA	NA	NA	NA	NA
AHW65813.1|425154_426279_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
AHW66836.1|426347_426692_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
AVC63516.1|427074_427173_+	hypothetical protein	NA	NA	NA	NA	NA
AHW67279.1|427463_428660_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
AHW67170.1|428649_431586_+	DNA repair protein Rad50	NA	NA	NA	NA	NA
AHW67850.1|431582_432524_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
AHW67091.1|432644_433607_-	foldase	NA	NA	NA	NA	NA
AHW66293.1|433811_434369_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
AHW66735.1|435101_435467_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
AHW66346.1|435608_436031_-	HIT family protein	NA	NA	NA	NA	NA
AHW67790.1|436164_436905_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
AHW68161.1|436897_438121_+	multidrug ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
AHW67760.1|438244_438748_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
AVC63517.1|438910_439021_+	hypothetical protein	NA	NA	NA	NA	NA
AHW68089.1|439010_440048_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
AHW67814.1|440105_441029_+	ferrochelatase	NA	NA	NA	NA	NA
AHW65740.1|441052_442453_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
AVC63518.1|442454_442682_-	hypothetical protein	NA	NA	NA	NA	NA
AHW68083.1|442775_443330_+	serine hydrolase family protein	NA	NA	NA	NA	NA
AHW66382.1|445786_446575_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
AHW66321.2|446587_447127_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
AHW68082.1|447926_448862_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
AHW66787.1|448863_449847_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
AVC63519.1|450088_450253_+	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
AHW66423.1|450278_451598_-|transposase	ISL3 family transposase IS1181	transposase	NA	NA	NA	NA
AVC63520.1|451854_452046_-	hypothetical protein	NA	NA	NA	NA	NA
AHW67840.1|452489_452633_+	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
AHW66701.1|452697_455691_+|bacteriocin	bacteriocin biosynthesis protein	bacteriocin	A0A2H4PQG8	Staphylococcus_phage	97.2	0.0e+00
AHW66138.1|455683_456928_+	lanthionine synthetase	NA	A0A2H4PQH9	Staphylococcus_phage	99.8	1.1e-237
AHW67353.1|456943_457462_+	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
AHW66833.1|457471_458845_+	peptidase S8	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
AHW67838.1|458867_459560_+	lantibiotic ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
AHW65995.1|459556_460318_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
AHW67350.1|460314_461013_+	BsaG protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
AHW67825.1|461486_462053_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
AVC63521.1|462362_462581_+	hypothetical protein	NA	NA	NA	NA	NA
AHW66183.1|463016_463733_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	96.2	2.0e-125
AHW65778.1|463857_464580_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
AHW67385.1|464637_465357_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
AHW66742.1|465477_466197_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
AVC63522.1|466145_466253_-	hypothetical protein	NA	NA	NA	NA	NA
AHW66920.1|466354_467071_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
AHW66672.1|467221_467941_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
AVC63523.1|468005_468140_+	hypothetical protein	NA	NA	NA	NA	NA
AHW67433.2|468120_469860_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	4.4e-288
AHW68102.1|469852_471052_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
AHW67420.2|476552_476912_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
AVC63524.1|477259_477361_-	hypothetical protein	NA	NA	NA	NA	NA
AHW66741.1|477782_477926_+	hypothetical protein	NA	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
AVC63525.1|478128_478338_+|transposase	transposase	transposase	A0A2H4PQV6	Staphylococcus_phage	100.0	1.4e-31
AHW67289.1|478661_479045_+	hypothetical protein	NA	NA	NA	NA	NA
AHW66348.1|479055_479232_+	hypothetical protein	NA	NA	NA	NA	NA
AHW67998.1|479233_479419_+	hypothetical protein	NA	NA	NA	NA	NA
AHW67638.2|479532_480174_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
AHW66014.1|480391_480943_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
AHW66060.1|481040_481385_-	DUF3969 domain-containing protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
AHW67917.1|481425_482052_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
AHW67593.1|482127_483123_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
AHW65996.2|483203_483854_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
AHW67303.2|484156_484612_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
AHW66339.1|484770_486249_+	2-succinylbenzoate-CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
AHW68307.1|486253_487255_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
AHW67299.1|487251_487509_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
AHW67639.2|487574_488048_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
AHW66520.2|488052_488799_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
AHW67057.1|489173_489659_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
AHW67059.1|489794_491387_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
AHW66642.1|491757_492951_+	S-adenosylmethionine synthase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
AHW67768.1|493075_493984_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
AHW68262.1|494195_495029_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
AHW68059.1|497111_497465_-	camphor resistance protein CrcB	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
AHW66981.1|497461_497827_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
AHW66204.1|498082_498385_-	hypothetical protein	NA	NA	NA	NA	NA
AHW68159.1|498644_499358_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
AHW65829.1|499797_500433_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
AHW67757.1|500728_501172_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
AHW67308.1|501158_501602_-	competence protein ComK	NA	NA	NA	NA	NA
AHW67973.2|501714_502185_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
AHW66218.1|502383_502608_+	hypothetical protein	NA	NA	NA	NA	NA
AHW67756.1|502883_503738_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
AHW66049.1|504032_504428_-	protein ArsC	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
AHW67887.2|504445_505738_-	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
AVC63526.1|505737_506052_-	ArsR family transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
AHW67030.1|506574_508077_+	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
AHW66373.2|508569_509601_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
AHW66197.1|509607_510240_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
AHW66383.1|510250_511432_+	riboflavin biosynthesis protein RibBA	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
AHW66128.1|511444_511909_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
AHW67905.1|512030_513032_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
AVC63603.1|512940_513132_+	hypothetical protein	NA	NA	NA	NA	NA
AVC63527.1|513143_513263_+	hypothetical protein	NA	NA	NA	NA	NA
AHW66233.1|513265_514093_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
AHW67436.1|515671_516073_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
AHW67131.1|516192_516756_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
AHW68303.1|516752_517706_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
AHW66469.2|517815_518997_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
AHW66058.2|519284_521702_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
AHW67325.1|521723_522035_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
AHW67635.1|522360_528921_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
>prophage 2
CP007539	Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome	2810186	654749	663792	2810186	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
AHW66243.1|654749_655754_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
AHW68272.1|655755_656781_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
AHW66087.1|656803_657943_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
AHW67245.1|657961_658222_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
AHW66147.1|658496_660776_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
AHW65785.1|660978_663252_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
AHW67235.1|663273_663792_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 3
CP007539	Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome	2810186	732929	741241	2810186	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
AHW65852.1|732929_734729_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
AHW66964.1|734952_736059_+	RNA polymerase sigma factor SigA	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
AHW67488.1|736189_736867_+|tRNA	tRNA (adenine(22)-N(1))-methyltransferase TrmK	tRNA	NA	NA	NA	NA
AHW68139.1|736869_737970_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
AHW66530.1|738083_739430_+	DEAD/DEAH box family ATP-dependent RNA helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
AHW67750.1|739439_740330_+	endonuclease	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
AHW67066.1|740455_741241_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 4
CP007539	Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome	2810186	1293122	1301595	2810186		Synechococcus_phage(33.33%)	9	NA	NA
AHW67893.1|1293122_1293689_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
AHW67934.1|1293691_1294720_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
AHW67883.1|1294712_1296197_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
AHW67754.1|1296175_1298365_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
AHW66306.1|1298357_1299029_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
AHW66910.1|1299030_1299294_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
AHW68311.1|1299293_1299998_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
AHW68099.1|1300001_1301126_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
AHW68125.1|1301112_1301595_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 5
CP007539	Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome	2810186	1462513	1483722	2810186	terminase,integrase,coat	Staphylococcus_phage(77.78%)	33	1465235:1465251	1481170:1481186
AHW67090.1|1462513_1463275_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
AHW68352.1|1463602_1464454_+	DUF368 domain-containing protein	NA	NA	NA	NA	NA
AHW66295.1|1464686_1464881_-	CsbD family protein	NA	NA	NA	NA	NA
1465235:1465251	attL	TTATTTAGCAGGAATAA	NA	NA	NA	NA
AHW67772.2|1465711_1465912_-	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
AVC63350.1|1465898_1466009_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	94.4	2.4e-11
AHW65991.2|1466079_1466232_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	98.0	7.6e-19
AHW65882.1|1466604_1467162_+	hypothetical protein	NA	A0A1W6JQE5	Staphylococcus_phage	73.8	1.4e-70
AHW67435.1|1467239_1468040_-	enterotoxin	NA	A0A097PAT7	Streptococcus_pyogenes_phage	49.4	1.0e-53
AHW67494.1|1468347_1468917_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	1.0e-100
AHW67302.1|1468913_1469255_-	pathogenicity island protein	NA	A0A1W6JQM3	Staphylococcus_phage	98.2	1.4e-57
AHW68155.1|1469257_1469785_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
AHW66908.1|1469835_1470054_-	hypothetical protein	NA	NA	NA	NA	NA
AHW68075.1|1470071_1470650_-	pathogenicity island protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
AHW66324.1|1470661_1471003_-	pathogenicity island protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
AHW66488.1|1471519_1472161_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	91.5	1.5e-108
AHW66893.1|1472157_1472442_-	pathogenicity island protein	NA	A0A1W6JQE4	Staphylococcus_phage	95.7	1.9e-47
AHW66141.1|1472443_1472806_-	pathogenicity island protein	NA	A0A1W6JQD5	Staphylococcus_phage	99.2	8.9e-66
AHW66955.1|1473106_1474564_-	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	96.1	1.0e-277
AHW67976.1|1474580_1475450_-	mobile element-associated protein	NA	A0A1W6JQL5	Staphylococcus_phage	92.7	3.4e-156
AHW67500.1|1475513_1475834_-	DUF1474 domain-containing protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
AHW68231.1|1475836_1476046_-	pathogenicity island protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
AHW66699.1|1476038_1476185_-	pathogenicity island protein	NA	NA	NA	NA	NA
AHW67611.1|1476196_1476469_-	pathogenicity island protein	NA	Q4ZE77	Staphylococcus_phage	90.0	9.7e-41
AHW66232.1|1476461_1476725_-	XRE family transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	94.8	3.1e-36
AHW66020.1|1476917_1477250_+	XRE family transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
AHW67283.1|1477261_1477720_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0H4J322	Staphylococcus_phage	83.0	5.1e-66
AHW66585.1|1477736_1478168_+	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	56.0	5.1e-36
AHW67914.2|1478237_1478966_+	exotoxin	NA	A0EX09	Staphylococcus_phage	35.4	2.3e-28
AHW65972.1|1478989_1479718_+	exotoxin	NA	A0EX09	Staphylococcus_phage	32.3	1.9e-22
AHW67369.1|1479806_1481027_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	6.4e-100
AHW66979.1|1481169_1481991_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
1481170:1481186	attR	TTATTTAGCAGGAATAA	NA	NA	NA	NA
AHW67789.2|1482008_1482704_-	ABC transporter permease	NA	NA	NA	NA	NA
AHW67894.1|1482696_1483722_-	methionine import ATP-binding protein MetN 2	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
>prophage 6
CP007539	Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome	2810186	1562208	1576995	2810186		uncultured_Caudovirales_phage(50.0%)	18	NA	NA
AHW66547.1|1562208_1562970_-	iron ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
AHW67845.1|1562966_1563923_-	iron ABC transporter permease	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
AHW67310.1|1563909_1564881_-	iron ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
AVC63360.1|1564919_1565075_-	hypothetical protein	NA	NA	NA	NA	NA
AVC63361.1|1565351_1565456_-	hypothetical protein	NA	NA	NA	NA	NA
AHW67133.1|1565588_1566560_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
AHW67793.1|1566677_1568783_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
AHW65886.1|1568745_1569144_-	protein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
AVC63362.1|1569293_1569560_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA	NA
AHW67109.1|1569944_1570811_+	EamA/RhaT family transporter	NA	NA	NA	NA	NA
AHW66350.1|1570830_1571331_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
AVC63363.1|1571360_1571606_+	hypothetical protein	NA	NA	NA	NA	NA
AHW66516.1|1571671_1573177_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
AVC63364.1|1573254_1573356_-	hypothetical protein	NA	NA	NA	NA	NA
AHW66980.1|1573446_1574364_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
AVC63365.1|1574776_1574872_-	hypothetical protein	NA	NA	NA	NA	NA
AHW65750.1|1575043_1575586_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA	NA
AHW65835.1|1575936_1576995_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 7
CP007539	Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome	2810186	1588967	1596787	2810186		Pandoravirus(16.67%)	10	NA	NA
AHW66561.1|1588967_1590119_-	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
AHW67118.1|1590102_1590696_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
AHW65992.1|1591046_1591715_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
AHW66481.1|1591716_1592136_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
AHW66240.1|1592139_1592853_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
AHW68023.1|1592951_1593536_+	hypothetical protein	NA	NA	NA	NA	NA
AHW67837.1|1593815_1594256_+	hypothetical protein	NA	NA	NA	NA	NA
AHW67949.1|1594597_1595071_+	DoxX family protein	NA	NA	NA	NA	NA
AHW67498.1|1595045_1595732_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AHW68226.1|1595731_1596787_+	two-component sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
>prophage 8
CP007539	Staphylococcus aureus subsp. aureus strain FDAARGOS_5 chromosome, complete genome	2810186	1987002	2029734	2810186	portal,tail,head,protease,holin,integrase,capsid,terminase	Staphylococcus_phage(85.92%)	71	1986252:1986269	2029828:2029845
1986252:1986269	attL	ATCCCATCCTTGTATGAT	NA	NA	NA	NA
AHW68148.1|1987002_1988457_-	CHAP domain-containing protein	NA	A0A0N6WMR3	Staphylococcus_phage	100.0	3.0e-290
AHW67533.1|1988468_1988771_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
AHW65982.1|1988906_1989206_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
AHW67958.1|1989251_1989416_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	98.1	2.5e-23
AHW67202.1|1989408_1989798_-	hypothetical protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
AHW67094.1|1989797_1991264_-	DUF2479 domain-containing protein	NA	A0A2I6PES7	Staphylococcus_phage	99.4	2.9e-272
AHW68016.1|1991263_1993174_-	hypothetical protein	NA	A0A2I6PEQ9	Staphylococcus_phage	99.8	0.0e+00
AHW68341.1|1993189_1993480_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
AHW66442.1|1993479_1995063_-	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
AHW66671.1|1995071_1995896_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
AHW66710.1|1995895_2002096_-|tail	phage tail tape measure protein	tail	Q4ZCL0	Staphylococcus_virus	99.6	0.0e+00
AHW66006.1|2002109_2002268_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
AHW67333.1|2002309_2002660_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
AHW67534.1|2002717_2003173_-|tail	phage tail protein	tail	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
AHW67476.1|2003264_2003906_-|tail	phage tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
AHW65922.1|2003940_2004336_-	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
AHW65747.1|2004336_2004738_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
AHW68271.1|2004734_2005067_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
AHW67720.1|2005078_2005357_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
AHW68321.1|2005425_2006589_-|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
AHW66088.1|2006600_2007374_-|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
AHW68002.1|2007357_2008596_-|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
AHW66565.1|2008600_2010292_-|terminase	terminase large subunit	terminase	A0A2I6PE44	Staphylococcus_phage	100.0	0.0e+00
AHW66215.1|2010281_2010587_-|terminase	phage terminase small subunit P27 family	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
AHW66065.1|2010715_2011030_-	HNH endonuclease	NA	A0A2I6PDC4	Staphylococcus_phage	100.0	2.5e-56
AHW66226.1|2011186_2011624_-	transcriptional regulator	NA	B7T0I6	Staphylococcus_virus	100.0	6.1e-77
AHW66765.2|2011636_2011987_-	helicase	NA	Q9B0E7	Staphylococcus_virus	98.3	3.5e-59
AHW67207.1|2011943_2012144_-	DUF1514 domain-containing protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
AHW68270.1|2012211_2012364_-	transcriptional regulator	NA	A0A2I6PEM5	Staphylococcus_phage	98.0	4.4e-19
AHW67691.1|2012356_2012560_-	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
AHW66315.1|2012556_2012751_-	hypothetical protein	NA	A0A0N7E0T8	Staphylococcus_phage	98.4	1.0e-28
AHW66319.1|2012747_2012954_-	DUF1381 domain-containing protein	NA	B7T0C2	Staphylococcus_virus	95.6	6.0e-19
AHW67254.1|2012990_2013533_-	dUTP pyrophosphatase	NA	Q4ZD81	Staphylococcus_virus	100.0	1.5e-96
AHW66038.1|2013537_2013774_-	hypothetical protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
AHW66970.1|2013766_2014075_-	hypothetical protein	NA	Q4ZBK6	Staphylococcus_phage	100.0	8.1e-52
AHW65911.1|2014071_2014419_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
AHW65985.1|2014415_2014817_-	hypothetical protein	NA	A0A0N7E0T5	Staphylococcus_phage	100.0	7.0e-72
AHW67680.1|2014819_2015026_-	hypothetical protein	NA	A0A0N9BAW9	Staphylococcus_phage	100.0	3.0e-34
AHW66369.2|2015039_2015282_-	hypothetical protein	NA	A0A0N7E0T2	Staphylococcus_phage	100.0	2.5e-40
AHW66439.1|2015285_2015642_-	hypothetical protein	NA	A0A0F6N3E3	Staphylococcus_phage	97.5	2.1e-59
AHW66418.1|2015653_2015911_-	XRE family transcriptional regulator	NA	Q4ZBU1	Staphylococcus_virus	100.0	4.1e-41
AHW66854.1|2015911_2016097_-	DUF3113 domain-containing protein	NA	A0A0H4IPE3	Staphylococcus_phage	96.7	1.2e-26
AHW66398.1|2016101_2016506_-	hypothetical protein	NA	A0A0H4ISQ5	Staphylococcus_phage	100.0	9.0e-67
AHW66985.1|2016502_2016928_-	adenine methyltransferase	NA	Q4ZAC6	Staphylococcus_virus	100.0	8.0e-82
AHW68074.1|2016937_2017159_-	DUF3269 domain-containing protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
AHW66114.2|2017161_2017377_-	hypothetical protein	NA	B7T0B0	Staphylococcus_virus	95.8	1.2e-33
AHW67216.1|2017373_2018615_-	damage-inducible protein	NA	C8CGZ3	Staphylococcus_phage	100.0	2.6e-229
AHW66999.1|2018611_2018968_-	hypothetical protein	NA	M9NS37	Staphylococcus_phage	98.3	6.9e-63
AHW67694.1|2018967_2019768_-	DnaD domain protein	NA	Q8SDW2	Staphylococcus_phage	98.5	8.7e-106
AHW65981.1|2019739_2020435_-	hypothetical protein	NA	A0A0E3XBQ6	Staphylococcus_phage	98.7	9.5e-133
AHW66221.1|2020448_2020868_-	Single-stranded DNA-binding protein 2	NA	Q4ZA54	Staphylococcus_virus	99.3	5.3e-62
AHW67745.1|2020867_2021491_-	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	99.0	5.7e-113
AHW66869.1|2021483_2021705_-	DUF2483 domain-containing protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
AHW67809.2|2021714_2022047_-	DUF1108 domain-containing protein	NA	A0A2I6PDT0	Staphylococcus_phage	99.1	1.1e-54
AHW67627.1|2021979_2022297_-	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	95.8	3.6e-31
AHW65897.1|2022386_2022548_-	DUF1270 domain-containing protein	NA	A9CR58	Staphylococcus_phage	100.0	8.6e-21
AHW66429.1|2022560_2022824_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	98.9	7.4e-46
AHW66196.1|2022878_2023130_+	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.9e-38
AHW65951.1|2023107_2023299_-	hypothetical protein	NA	A7TWL8	Staphylococcus_phage	98.4	1.1e-25
AHW66957.1|2023346_2023727_+	DUF2513 domain-containing protein	NA	Q4ZCQ5	Staphylococcus_virus	99.2	3.8e-67
AHW67274.1|2023713_2023911_-	hypothetical protein	NA	A7TWF5	Staphylococcus_phage	95.4	8.6e-23
AHW67923.1|2023967_2024333_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
AVC63393.1|2024301_2024547_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
AHW67397.1|2024586_2024811_-	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
AHW66987.1|2024811_2025603_-	phage antirepressor	NA	A0A0E3T9K2	Staphylococcus_phage	99.6	4.2e-145
AHW67510.1|2025759_2026068_-	hypothetical protein	NA	S4V9P0	Staphylococcus_phage	100.0	1.3e-49
AHW66514.1|2026082_2026301_-	XRE family transcriptional regulator	NA	Q8SDX1	Staphylococcus_phage	98.6	8.3e-35
AHW66711.1|2026442_2027162_+	XRE family transcriptional regulator	NA	Q8SDX2	Staphylococcus_phage	100.0	9.8e-133
AHW65899.1|2027361_2027544_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
AHW67067.1|2027621_2028335_+	toxin MazF	NA	A0A1X9H026	Staphylococcus_phage	99.6	2.5e-128
AHW66802.1|2028528_2029734_+|integrase	site-specific integrase	integrase	A0A1X9H094	Staphylococcus_phage	100.0	5.0e-222
2029828:2029845	attR	ATCCCATCCTTGTATGAT	NA	NA	NA	NA
