The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP012344	Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708, complete genome	4752095	1155052	1200275	4752095	head,lysis,holin,tail	Salmonella_phage(75.81%)	62	NA	NA
AXQ03333.1|1155052_1156282_+	DUF4102 domain-containing protein	NA	H6WRW7	Salmonella_phage	94.4	2.9e-233
AXQ03334.1|1156259_1156544_-	excisionase Xis	NA	H6WRW8	Salmonella_phage	85.1	1.6e-41
AXQ03335.1|1156584_1156824_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
AXQ03336.1|1156866_1158024_-	enterohemolysin	NA	S4TTE8	Salmonella_phage	100.0	1.6e-217
AXQ03337.1|1157986_1160914_-	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	99.2	0.0e+00
AXQ03338.1|1161040_1161391_-	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
AXQ03339.1|1161412_1161571_-	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
AXQ03340.1|1161969_1162374_-	transcriptional regulator	NA	H6WRX4	Salmonella_phage	99.3	1.6e-71
AXQ03341.1|1162503_1162740_+	Cro/Cl family transcriptional regulator	NA	H6WRX5	Salmonella_phage	100.0	1.8e-38
AXQ03342.1|1162705_1163080_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	100.0	3.0e-64
AXQ03343.1|1164089_1164839_+	DNA replication protein DnaC	NA	S4TNF5	Salmonella_phage	99.2	9.0e-137
AXQ03344.1|1164849_1165197_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	96.5	7.2e-57
AXQ03746.1|1165544_1165808_+	hypothetical protein	NA	A0A2H4A316	Salmonella_phage	85.7	4.5e-19
AXQ03345.1|1165810_1166068_+	hypothetical protein	NA	A0A192Y5W0	Salmonella_phage	100.0	1.3e-42
AXQ03346.1|1166078_1166360_+	hypothetical protein	NA	Q5G8V2	Enterobacteria_phage	90.9	1.5e-15
AXQ03347.1|1166453_1166720_+	hypothetical protein	NA	S4TNF2	Salmonella_phage	100.0	1.5e-46
AXQ03348.1|1166874_1167114_+	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	3.3e-37
AXQ03349.1|1167103_1167409_+	hypothetical protein	NA	H6WRY6	Salmonella_phage	100.0	9.8e-42
AXQ03350.1|1167448_1168051_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.0	2.8e-109
AXQ03351.1|1168050_1168257_+	hypothetical protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
AXQ03352.1|1168259_1168871_+	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	96.1	3.6e-91
AXQ03353.1|1168867_1169008_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
AXQ03354.1|1169004_1169685_+	antiterminator	NA	I6PDF8	Cronobacter_phage	54.5	1.2e-60
AKW03186.2|1169805_1170492_-	PipA/GogA/GtgA family type III secretion system effector	NA	Q9MBM0	Phage_Gifsy-2	99.1	1.8e-131
AKW03185.2|1170767_1171097_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	99.1	2.2e-55
AKW03184.2|1171080_1171533_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	2.3e-79
AKW04994.2|1171550_1172000_+|lysis	lysis protein	lysis	H6WRZ5	Salmonella_phage	83.2	2.0e-59
AXQ03355.1|1172217_1172742_+	Rha family transcriptional regulator	NA	G8C7W4	Escherichia_phage	96.5	9.8e-90
AXQ03356.1|1172804_1173434_+	hypothetical protein	NA	A0A0M3ULJ9	Salmonella_phage	99.5	2.7e-110
AXQ03357.1|1173436_1175059_+	TerL protein	NA	A0A0M5M1R6	Salmonella_phage	99.4	0.0e+00
AXQ03358.1|1175058_1176528_+	DUF1073 domain-containing protein	NA	A0A0M4S6U1	Salmonella_phage	99.4	5.8e-281
AXQ03747.1|1176619_1177150_+|head	phage head morphogenesis protein	head	A0A0M4REK0	Salmonella_phage	86.9	1.3e-84
AXQ03359.1|1177164_1178397_+	DUF2213 domain-containing protein	NA	A0A0M4R5A6	Salmonella_phage	98.5	9.0e-227
AXQ03360.1|1178401_1178899_+	hypothetical protein	NA	A0A0M4QWZ6	Salmonella_phage	99.4	3.3e-87
AXQ03361.1|1178910_1179852_+	DUF2184 domain-containing protein	NA	A0A0M3ULD3	Salmonella_phage	99.0	3.8e-177
AXQ03362.1|1179893_1180262_+	hypothetical protein	NA	A0A0M4RTX5	Salmonella_phage	98.4	5.7e-60
AXQ03363.1|1180227_1180635_+	DUF4054 domain-containing protein	NA	A0A0M5M3S2	Salmonella_phage	95.6	3.0e-70
AXQ03364.1|1180631_1181186_+	hypothetical protein	NA	A0A0M4S631	Salmonella_phage	99.5	1.8e-94
AXQ03365.1|1181172_1181562_+|head,tail	head-tail adaptor	head,tail	A0A0M3ULK0	Salmonella_phage	96.9	1.1e-66
AXQ03366.1|1181536_1182100_+	hypothetical protein	NA	A0A0M4R331	Salmonella_phage	75.3	7.6e-80
AKW03170.2|1182103_1183249_+	DUF3383 domain-containing protein	NA	A0A2H4J8G4	uncultured_Caudovirales_phage	74.5	1.7e-163
AKW03169.2|1183261_1183705_+	DUF3277 family protein	NA	A0A2H4J619	uncultured_Caudovirales_phage	74.5	6.0e-56
AKW03168.2|1183708_1184161_+	hypothetical protein	NA	A0A0M4S6U8	Salmonella_phage	77.2	8.5e-58
AXQ03748.1|1184172_1184349_+	lytic transglycosylase	NA	A0A2H4J1A2	uncultured_Caudovirales_phage	46.0	2.9e-06
AXQ03367.1|1184338_1186291_+	lytic transglycosylase catalytic	NA	A0A0M4REK7	Salmonella_phage	64.5	4.0e-168
AXQ03368.1|1186290_1186941_+	hypothetical protein	NA	A0A0M3ULD5	Salmonella_phage	60.6	3.9e-56
AXQ03369.1|1186944_1187247_+	hypothetical protein	NA	A0A2H4J495	uncultured_Caudovirales_phage	57.0	2.0e-26
AXQ03370.1|1187249_1188281_+	hypothetical protein	NA	A0A2H4J1B2	uncultured_Caudovirales_phage	51.7	3.3e-97
AXQ03371.1|1188277_1188613_+	hypothetical protein	NA	A0A2H4J1A5	uncultured_Caudovirales_phage	52.2	1.1e-20
AXQ03372.1|1188619_1188997_-	Arc family DNA-binding protein	NA	A0A0P0ZBD1	Stx2-converting_phage	75.4	6.7e-16
AXQ03373.1|1189097_1189256_+	Arc family DNA-binding protein	NA	A0A077KAX5	Edwardsiella_phage	71.4	2.1e-11
AXQ03374.1|1189329_1189893_+	hypothetical protein	NA	H6WRU8	Salmonella_phage	59.0	4.5e-32
AXQ03375.1|1189957_1190743_+	phage repressor protein	NA	A0A2L1IV39	Escherichia_phage	62.7	1.3e-85
AKW03161.2|1190806_1191562_+	translation initiation factor IF-2	NA	A0A0M5M1K7	Salmonella_phage	78.5	1.6e-104
AXQ03376.1|1191568_1191682_+	hypothetical protein	NA	A0A0M4S639	Salmonella_phage	100.0	3.2e-14
AKW03160.2|1191697_1192051_+	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	96.6	3.5e-59
AKW03159.2|1192051_1193251_+	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	98.2	9.1e-216
AKW03158.2|1193247_1193928_+	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	96.9	7.6e-127
AXQ03377.1|1193927_1195340_+	hypothetical protein	NA	A0A1B0V7G4	Salmonella_phage	81.9	2.0e-206
AXQ03378.1|1195346_1195763_+|tail	tail fiber assembly protein	tail	A0A1B0V844	Salmonella_phage	90.3	1.0e-65
AXQ03379.1|1196580_1198071_-	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	98.4	2.8e-254
AKW01681.1|1198475_1200275_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
>prophage 2
CP012344	Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708, complete genome	4752095	1661765	1670934	4752095	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
AXQ03410.1|1661765_1662713_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
AKW04946.2|1662696_1663428_+	ABC transporter permease	NA	NA	NA	NA	NA
AKW02122.1|1663408_1663516_-	protein YohO	NA	NA	NA	NA	NA
AKW02123.1|1663575_1664307_-	transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
AKW02124.2|1664529_1666215_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.1	2.4e-278
AKW02125.2|1666211_1666931_+	DNA-binding response regulator	NA	NA	NA	NA	NA
AKW02126.2|1666977_1667445_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
AKW02128.1|1668201_1668660_-	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
AKW02129.2|1668900_1670934_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	26.9	6.1e-55
>prophage 3
CP012344	Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708, complete genome	4752095	1936669	1987227	4752095	integrase,protease,transposase,tail	Enterobacteria_phage(25.0%)	51	1952687:1952702	1984848:1984863
AXQ03431.1|1936669_1937925_-|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	34.5	2.2e-18
AKW02371.1|1938059_1939502_-	pyruvate kinase II	NA	NA	NA	NA	NA
AKW02372.2|1939625_1940495_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
AXQ03432.1|1940678_1940864_-	hypothetical protein	NA	NA	NA	NA	NA
AKW02373.1|1940836_1942312_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	37.5	2.6e-79
AKW02374.2|1942546_1944358_+	phosphogluconate dehydratase	NA	NA	NA	NA	NA
AKW02375.1|1944395_1945037_+	keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase	NA	NA	NA	NA	NA
AKW02376.2|1945136_1946315_-	phosphoribosylglycinamide formyltransferase 2	NA	NA	NA	NA	NA
AKW02377.1|1946445_1946736_+	DNA damage-inducible protein YebG	NA	NA	NA	NA	NA
AKW02378.1|1946803_1947157_+	hypothetical protein	NA	NA	NA	NA	NA
AKW02379.2|1947250_1947910_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
AKW02380.2|1948122_1950174_+	oligopeptidase B	NA	NA	NA	NA	NA
AKW02381.2|1950208_1950907_-	exodeoxyribonuclease X	NA	Q6UAU3	Klebsiella_phage	40.4	2.8e-07
AKW02382.2|1950930_1951587_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
AKW02383.1|1951694_1951925_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
AKW02384.2|1952062_1952437_+	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
AKW04952.2|1952437_1953313_+	hypothetical protein	NA	NA	NA	NA	NA
1952687:1952702	attL	GGCGCGGTGCTGCAAA	NA	NA	NA	NA
AKW02385.1|1953329_1953683_+	DUF2511 domain-containing protein	NA	NA	NA	NA	NA
AKW02386.2|1953740_1953860_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ03433.1|1954056_1954785_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	51.2	5.6e-51
AXQ03763.1|1954672_1955023_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ03434.1|1956196_1956394_-	hypothetical protein	NA	NA	NA	NA	NA
AKW03155.2|1958235_1959036_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ03435.1|1959969_1960314_-|integrase	integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	47.3	1.8e-20
AXQ03436.1|1960763_1961159_+	DUF977 family protein	NA	NA	NA	NA	NA
AXQ03437.1|1961445_1962576_-	GGDEF domain-containing protein	NA	NA	NA	NA	NA
AXQ03438.1|1962971_1964951_+	MBL fold metallo-hydrolase	NA	A0A2P0VMX1	Tetraselmis_virus	46.2	2.1e-161
AXQ03439.1|1964968_1965160_-	hypothetical protein	NA	NA	NA	NA	NA
AKW02393.2|1965359_1965974_-	disulfide bond formation protein B	NA	NA	NA	NA	NA
AKW04954.2|1965983_1966142_-	hypothetical protein	NA	NA	NA	NA	NA
AKW02394.2|1966274_1967189_-	protein PagO	NA	NA	NA	NA	NA
AXQ03764.1|1968656_1968857_+	hypothetical protein	NA	NA	NA	NA	NA
AKW02395.2|1969122_1969491_-|integrase	integrase	integrase	K7PHK0	Enterobacteria_phage	38.9	4.5e-17
AKW02397.2|1970933_1971074_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ03440.1|1971239_1971509_-	hypothetical protein	NA	B6SCX2	Bacteriophage	47.9	3.1e-07
AXQ03441.1|1971555_1971750_+	hypothetical protein	NA	NA	NA	NA	NA
AKW02399.2|1971878_1972298_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
AKW02400.2|1972670_1973147_-	hypothetical protein	NA	NA	NA	NA	NA
AKW02401.2|1973474_1973870_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	32.8	5.4e-16
AKW02402.2|1974553_1975276_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
AKW02403.2|1975560_1975725_+	hypothetical protein	NA	NA	NA	NA	NA
AKW02404.2|1975947_1976598_+	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	50.5	1.2e-57
AKW02405.1|1976616_1976808_-	DUF1482 family protein	NA	NA	NA	NA	NA
AKW02406.2|1976917_1977157_-	DUF1480 family protein	NA	NA	NA	NA	NA
AKW04955.2|1977271_1978711_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA	NA
AKW02407.2|1978788_1981428_-	PqiB family protein	NA	NA	NA	NA	NA
AKW02408.2|1981390_1982674_-	paraquat-inducible protein A	NA	NA	NA	NA	NA
AKW02409.2|1982715_1983300_+	GAF domain-containing protein	NA	NA	NA	NA	NA
AKW02410.2|1983397_1984084_+	RNA chaperone ProQ	NA	NA	NA	NA	NA
AKW02411.2|1984103_1986152_+|tail,protease	tail-specific protease	tail,protease	A0A0R6PIZ1	Moraxella_phage	33.5	8.0e-87
1984848:1984863	attR	GGCGCGGTGCTGCAAA	NA	NA	NA	NA
AKW02412.1|1986345_1987227_+|protease	protease HtpX	protease	NA	NA	NA	NA
>prophage 4
CP012344	Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708, complete genome	4752095	2595895	2643853	4752095	tail,terminase,head,tRNA,capsid,portal,transposase,integrase,holin	Salmonella_phage(31.37%)	62	2590781:2590800	2639780:2639799
2590781:2590800	attL	ATTGAGGGAGTTTTGATAAA	NA	NA	NA	NA
AXQ03488.1|2595895_2596189_-	hypothetical protein	NA	B6SD57	Bacteriophage	53.5	1.7e-19
AXQ03489.1|2596153_2597224_+	ParB/RepB/Spo0J family plasmid partition protein	NA	Q7Y3Y7	Yersinia_phage	60.4	1.1e-116
AXQ03490.1|2597354_2597663_-	hypothetical protein	NA	K7PGV5	Enterobacterial_phage	55.1	8.4e-25
AXQ03491.1|2597665_2597908_-	DNA polymerase V	NA	I6PD82	Cronobacter_phage	57.0	1.3e-20
AXQ03492.1|2597962_2598199_-	hypothetical protein	NA	S4TTF2	Salmonella_phage	90.6	5.5e-08
AXQ03493.1|2598761_2599280_-|tail	phage tail protein	tail	A0A1S6KZY8	Salmonella_phage	63.4	2.9e-46
AXQ03494.1|2599294_2601973_-	shikimate transporter	NA	A0A1B0VFW4	Salmonella_phage	67.1	6.2e-156
AXQ03495.1|2602026_2602269_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ03496.1|2602307_2605670_-	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	80.0	0.0e+00
AXQ03497.1|2605732_2606380_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	78.1	7.1e-90
AXQ03498.1|2606277_2607015_-|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	84.6	1.2e-128
AXQ03499.1|2607021_2607720_-|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	75.4	3.5e-103
AXQ03500.1|2607729_2608059_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	71.3	7.3e-43
AXQ03501.1|2608061_2611103_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	64.7	4.5e-296
AXQ03502.1|2611074_2611413_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	2.3e-31
AXQ03503.1|2611409_2611805_-|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
AXQ03504.1|2611855_2612602_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
AXQ03505.1|2612609_2613011_-|tail	phage tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
AXQ03506.1|2613007_2613586_-|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
AXQ03507.1|2613691_2614822_+|transposase	transposase	transposase	Q9G0F2	Phage_Gifsy-1	97.9	8.9e-213
AXQ03508.1|2614854_2615238_-|tail	phage tail protein	tail	A0A0K2FJB7	Enterobacteria_phage	54.7	1.7e-27
AXQ03509.1|2615248_2615608_-	DNA packaging protein	NA	NA	NA	NA	NA
AXQ03510.1|2615665_2616694_-|capsid	minor capsid protein E	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
AXQ03511.1|2616748_2617096_-|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	53.8	1.4e-20
AXQ03512.1|2617108_2618605_-	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.4	9.6e-98
AXQ03513.1|2618594_2620175_-|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	1.2e-188
AXQ03514.1|2620171_2620375_-|tail	phage tail protein	tail	K7PM10	Enterobacteria_phage	73.8	1.9e-17
AXQ03515.1|2620358_2622290_-|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.7	2.8e-259
AXQ03516.1|2622261_2622807_-|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	79.1	7.4e-56
AXQ03517.1|2623065_2623569_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ03518.1|2623671_2624214_-	DUF2514 family protein	NA	NA	NA	NA	NA
AXQ03519.1|2624210_2624825_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	91.7	2.3e-106
AXQ03520.1|2624824_2625106_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	80.6	2.6e-36
AXQ03521.1|2625092_2625482_-	hypothetical protein	NA	K7PHB9	Enterobacterial_phage	72.5	4.8e-41
AXQ03774.1|2625982_2626402_-	hypothetical protein	NA	A0A291AWZ9	Escherichia_phage	75.5	6.0e-58
AXQ03522.1|2626627_2627206_-	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	57.2	7.1e-49
AXQ03775.1|2627220_2628210_-	DUF968 domain-containing protein	NA	A0A1C9IHZ5	Salmonella_phage	98.8	1.5e-192
AXQ03523.1|2628217_2629123_-	KilA-N domain-containing protein	NA	A0A192Y6F8	Salmonella_phage	99.0	4.8e-161
AXQ03524.1|2629094_2629484_-	RusA family crossover junction endodeoxyribonuclease	NA	K7PH72	Enterobacteria_phage	86.8	4.2e-61
AXQ03525.1|2629480_2630134_-	phage N-6-adenine-methyltransferase	NA	A5LH72	Enterobacteria_phage	88.4	1.6e-113
AXQ03526.1|2630133_2630658_-	PerC family transcriptional regulator	NA	Q8HA95	Salmonella_phage	97.7	2.5e-93
AXQ03527.1|2630617_2631436_-	helix-turn-helix domain-containing protein	NA	Q8HA96	Salmonella_phage	97.4	9.5e-132
AXQ03528.1|2631432_2631657_-	hypothetical protein	NA	A0A1C9II64	Salmonella_phage	100.0	3.3e-39
AXQ03776.1|2633168_2633498_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A088CBP5	Shigella_phage	90.8	2.6e-40
AXQ03529.1|2633487_2633796_+	XRE family transcriptional regulator	NA	A0A088CD40	Shigella_phage	93.1	2.5e-45
AXQ03530.1|2633814_2633991_-	DUF4222 domain-containing protein	NA	S5M7S5	Escherichia_phage	94.6	4.6e-28
AXQ03531.1|2634130_2634685_-	hypothetical protein	NA	A0A1C9II13	Salmonella_phage	100.0	6.9e-102
AXQ03532.1|2634713_2634938_-	XRE family transcriptional regulator	NA	A0A1C9IHV8	Salmonella_phage	100.0	1.9e-34
AXQ03533.1|2634876_2635062_-	amino acid permease	NA	NA	NA	NA	NA
AXQ03534.1|2635035_2635731_+	helix-turn-helix transcriptional regulator	NA	Q8HAA0	Salmonella_phage	99.6	4.6e-127
AXQ03535.1|2636065_2636263_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ03777.1|2636214_2636700_-	hypothetical protein	NA	A0A1C9IHY8	Salmonella_phage	87.3	8.3e-27
AXQ03536.1|2636635_2636824_+	hypothetical protein	NA	A0A192Y6G0	Salmonella_phage	93.4	2.1e-26
AXQ03537.1|2636820_2637177_+	hypothetical protein	NA	Q8HAA1	Salmonella_phage	100.0	2.5e-60
AXQ03538.1|2637234_2638062_+	DUF2303 family protein	NA	Q8HAA2	Salmonella_phage	98.5	5.4e-151
AXQ03539.1|2638425_2638671_+	excisionase	NA	NA	NA	NA	NA
AXQ03540.1|2638651_2639779_+|integrase	integrase	integrase	O21925	Phage_21	59.2	1.2e-121
AKW02978.2|2639890_2641141_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.1e-19
2639780:2639799	attR	ATTGAGGGAGTTTTGATAAA	NA	NA	NA	NA
AKW02979.2|2641312_2641894_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA	NA
AKW02980.2|2641890_2642220_+	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
AKW02981.1|2642231_2642693_+	NUDIX hydrolase	NA	NA	NA	NA	NA
AKW02982.1|2642746_2643853_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
>prophage 5
CP012344	Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708, complete genome	4752095	2788929	2886941	4752095	lysis,tail,terminase,tRNA,protease,holin	Salmonella_phage(37.29%)	101	NA	NA
AKW03125.2|2788929_2789610_+|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	66.4	2.8e-73
AXQ03551.1|2789953_2790163_-	hypothetical protein	NA	NA	NA	NA	NA
AKW03126.2|2790228_2790888_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	3.5e-44
AKW03127.2|2790974_2791304_+	sulfurtransferase TusE	NA	NA	NA	NA	NA
AKW03128.1|2791300_2791582_-	acylphosphatase	NA	NA	NA	NA	NA
AKW03129.2|2791630_2792410_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
AKW03130.1|2792435_2792984_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
AKW03131.2|2793198_2794410_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA	NA
AKW03132.2|2794467_2794785_+	heat shock protein HspQ	NA	NA	NA	NA	NA
AKW03133.2|2794829_2795246_-	CoA-binding protein	NA	NA	NA	NA	NA
AKW03134.2|2795416_2796079_+	DUF2057 family protein	NA	NA	NA	NA	NA
AKW03135.1|2796173_2796632_+	methylglyoxal synthase	NA	NA	NA	NA	NA
AKW03136.2|2796667_2798722_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.6	2.9e-20
AKW03137.1|2798845_2799292_+	YccF domain-containing protein	NA	NA	NA	NA	NA
AKW03138.2|2799310_2801464_+	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
AKW03139.2|2801450_2802056_-	TfoX family DNA transformation protein	NA	NA	NA	NA	NA
AKW03140.2|2802272_2802782_+	cell division inhibitor SulA	NA	NA	NA	NA	NA
AKW04993.2|2803138_2804191_+	porin OmpA	NA	NA	NA	NA	NA
AKW03141.1|2804262_2804715_-	macrodomain Ter protein	NA	NA	NA	NA	NA
AKW03142.2|2804900_2806661_+|protease	Lon protease family protein	protease	NA	NA	NA	NA
AKW03143.2|2806729_2807248_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA	NA
AKW03144.1|2807347_2807515_-	ribosome modulation factor	NA	NA	NA	NA	NA
AKW03145.1|2807770_2808334_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
AKW03146.2|2808330_2809971_-	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
AKW03147.2|2809975_2811229_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
AKW03148.2|2811243_2813151_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.9	3.2e-53
AKW03149.2|2813163_2815272_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA	NA
AKW03150.2|2815370_2816480_+	MOSC domain-containing protein	NA	NA	NA	NA	NA
AKW03151.1|2816476_2817019_-	cell division protein ZapC	NA	NA	NA	NA	NA
AKW03152.2|2817184_2818195_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
AKW03153.2|2818402_2821015_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.4	6.3e-20
AKW03154.2|2821441_2821633_+	DinI family protein	NA	S4TNM0	Salmonella_phage	95.2	6.2e-26
AXQ03552.1|2821902_2822589_+	virulence protein	NA	NA	NA	NA	NA
AXQ03553.1|2822573_2822873_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ03554.1|2822941_2823568_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	63.2	1.4e-66
AXQ03555.1|2824215_2825094_-	SPI-2 type III secretion system effector SseI	NA	Q9MBL9	Phage_Gifsy-2	98.3	1.5e-170
AKW03156.2|2825658_2826240_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	89.5	1.7e-95
AXQ03556.1|2826239_2828678_-|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	63.2	1.9e-90
AXQ03557.1|2828731_2828974_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ03558.1|2829012_2829936_-	DUF1983 domain-containing protein	NA	K7PKJ2	Enterobacteria_phage	76.9	5.6e-56
AXQ03559.1|2832433_2833138_-|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	63.1	2.4e-67
AXQ03560.1|2833035_2833773_-|tail	phage tail protein	tail	A0A0P0ZE89	Stx2-converting_phage	76.1	1.6e-114
AXQ03561.1|2833782_2834478_-|tail	phage minor tail protein L	tail	A0A0K2FJ01	Enterobacteria_phage	66.7	1.3e-89
AXQ03562.1|2834567_2835101_+	superoxide dismutase [Cu-Zn] SodC1	NA	Q9MC02	Salmonella_phage	54.0	1.8e-46
AXQ03563.1|2835217_2835715_-	Ail/OmpX	NA	A0A1B0VBR9	Salmonella_phage	36.6	1.4e-16
AXQ03564.1|2835813_2836146_-|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	61.5	2.6e-35
AXQ03779.1|2836142_2839076_-|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	61.1	4.7e-258
AXQ03565.1|2839155_2839485_-|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	50.9	5.0e-23
AXQ03566.1|2839481_2839880_-|tail	phage minor tail protein G	tail	K7PLV8	Enterobacteria_phage	56.8	8.6e-30
AXQ03567.1|2839925_2840675_-|tail	phage tail protein	tail	A0A291AWU6	Escherichia_phage	68.6	3.7e-90
AXQ03568.1|2840686_2841088_-|tail	phage tail protein	tail	K7PHM6	Enterobacterial_phage	60.9	9.0e-43
AXQ03569.1|2841084_2841651_-|tail	phage tail protein	tail	Q9G063	Phage_Gifsy-2	95.7	2.1e-13
AXQ03570.1|2841631_2841931_-	ATP-binding protein	NA	K7PH43	Enterobacteria_phage	45.1	4.5e-15
AXQ03571.1|2841923_2842247_-	DUF2190 family protein	NA	K7PLV6	Enterobacteria_phage	60.4	6.6e-28
AXQ03572.1|2843588_2843795_-	primosomal replication protein PriB/PriC domain protein	NA	A0A1W6JT66	Pseudomonas_phage	53.3	2.9e-05
AXQ03573.1|2843791_2845930_-|terminase	phage terminase large subunit family protein	terminase	A5LH27	Enterobacteria_phage	72.3	6.5e-289
AXQ03574.1|2845886_2846420_-	DUF1441 family protein	NA	A0A291AWV8	Escherichia_phage	47.5	3.8e-33
AXQ03781.1|2846627_2847107_-|lysis	lysis protein	lysis	Q56118	Enterobacteria_phage	77.7	5.0e-56
AXQ03575.1|2847124_2847577_-	lysozyme	NA	A0A0M4R365	Salmonella_phage	97.3	3.9e-79
AXQ03780.1|2847560_2847890_-|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	99.1	2.2e-55
AXQ03576.1|2848165_2848852_+	PipA/GogA/GtgA family type III secretion system effector	NA	Q9MBM0	Phage_Gifsy-2	98.7	3.9e-131
AKW03187.2|2849212_2849662_+	hypothetical protein	NA	NA	NA	NA	NA
AKW03188.1|2849797_2849923_-	hypothetical protein	NA	NA	NA	NA	NA
AKW03190.1|2850321_2851119_-	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.6	4.0e-151
AKW03191.2|2851108_2851255_-	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	85.4	4.1e-14
AKW03192.2|2851251_2851863_-	recombination protein NinG	NA	A0A0M4RU10	Salmonella_phage	96.1	3.6e-91
AKW03193.2|2851865_2852072_-	hypothetical protein	NA	S4TNP0	Salmonella_phage	100.0	3.5e-35
AKW03194.2|2852071_2852674_-	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	100.0	2.6e-110
AKW03195.2|2852708_2852957_-	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	98.8	8.0e-42
AKW03196.1|2853073_2853307_-	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
AXQ03577.1|2853461_2853728_-	hypothetical protein	NA	S4TNF2	Salmonella_phage	98.9	7.5e-46
AXQ03578.1|2853826_2854624_-	hypothetical protein	NA	A0A1R3Y5Q8	Salmonella_virus	80.7	4.9e-32
AXQ03579.1|2854637_2855333_-	phage replication protein	NA	G8C7U6	Escherichia_phage	45.9	1.5e-56
AXQ03580.1|2855329_2856166_-	replication protein	NA	K7PGT1	Enterobacteria_phage	48.5	3.5e-49
AKW04995.2|2856257_2856632_-	hypothetical protein	NA	S4TTD7	Salmonella_phage	98.4	3.3e-63
AXQ03581.1|2856597_2856825_-	Rha family transcriptional regulator	NA	K7PKS2	Enterobacteria_phage	95.9	1.5e-34
AKW03199.2|2856838_2857306_+	helix-turn-helix domain-containing protein	NA	K7PHG0	Enterobacteria_phage	84.5	7.9e-67
AXQ03582.1|2857456_2857930_+	hypothetical protein	NA	K7PLT9	Enterobacteria_phage	58.5	8.6e-53
AXQ03583.1|2857926_2858859_+	hypothetical protein	NA	K7PGT0	Enterobacteria_phage	53.2	9.6e-88
AKW03202.2|2858891_2859098_-	hypothetical protein	NA	K7P7I0	Enterobacteria_phage	67.6	1.6e-16
AKW03203.2|2859496_2859655_+	hypothetical protein	NA	H6WRX3	Salmonella_phage	98.1	9.0e-23
AKW03204.2|2859676_2860027_+	DNA breaking-rejoining protein	NA	S4TSN6	Salmonella_phage	97.4	1.1e-60
AKW03205.2|2860153_2863081_+	exodeoxyribonuclease	NA	S4TNL0	Salmonella_phage	99.2	0.0e+00
AKW03206.2|2863043_2864201_+	enterohemolysin	NA	S4TTE8	Salmonella_phage	100.0	1.6e-217
AKW03207.1|2864243_2864483_+	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
AKW03208.1|2864523_2864772_+	excisionase	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
AKW03209.2|2864816_2866094_+	DUF3596 domain-containing protein	NA	S4TSP2	Salmonella_phage	99.8	1.1e-248
AKW03210.1|2866299_2867502_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
AKW03211.2|2867579_2869016_-	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
AKW03212.2|2869279_2870476_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
AKW03213.1|2870793_2871255_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
AKW03214.2|2871455_2872856_+|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	34.9	1.7e-80
AKW03215.2|2873462_2874560_+	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.5	7.0e-98
AKW03216.1|2874744_2875935_+	aspartate aminotransferase	NA	NA	NA	NA	NA
AKW03217.2|2875996_2876644_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
AKW03218.2|2876671_2877220_-	DUF882 domain-containing protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
AKW03219.2|2877479_2879327_-	L,D-transpeptidase	NA	NA	NA	NA	NA
AKW03220.2|2879671_2884138_-	chromosome partition protein MukB	NA	NA	NA	NA	NA
AKW03221.1|2884137_2884842_-	chromosome partition protein MukE	NA	NA	NA	NA	NA
AKW03222.1|2884822_2886145_-	chromosome partition protein MukF	NA	NA	NA	NA	NA
AKW03223.2|2886137_2886941_-|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
>prophage 6
CP012344	Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708, complete genome	4752095	2938827	2946140	4752095	integrase,protease	Ralstonia_phage(16.67%)	8	2933443:2933457	2944876:2944890
2933443:2933457	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
AXQ03587.1|2938827_2939205_+|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	41.0	1.2e-20
AXQ03588.1|2939366_2939564_+	hypothetical protein	NA	NA	NA	NA	NA
AKW03261.2|2939776_2942053_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	2.8e-165
AKW03262.1|2942083_2942404_-|protease	ATP-dependent Clp protease adaptor ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
AKW03263.1|2942727_2942949_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
AXQ03589.1|2942903_2943098_-	hypothetical protein	NA	NA	NA	NA	NA
AKW03264.2|2943078_2945025_-	macrolide ABC transporter permease/ATP-binding protein MacB	NA	G9BWD6	Planktothrix_phage	43.1	1.6e-39
2944876:2944890	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
AKW03265.2|2945021_2946140_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.1	3.1e-08
>prophage 7
CP012344	Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708, complete genome	4752095	3533864	3574907	4752095	lysis,tail,terminase,protease,portal,coat,integrase,holin	Salmonella_phage(51.79%)	58	3530612:3530657	3571017:3571062
3530612:3530657	attL	TGGTGCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
AXQ03621.1|3533864_3535625_-	hypothetical protein	NA	I6S5Y0	Salmonella_phage	85.9	7.4e-57
AKW04937.2|3535864_3536194_+	hypothetical protein	NA	NA	NA	NA	NA
AKW01908.2|3536211_3538125_-	DNA transfer protein	NA	E7C9U6	Salmonella_phage	98.7	0.0e+00
AKW04936.2|3538124_3539444_-	DNA transfer protein	NA	A0A220NR03	Salmonella_phage	90.2	2.5e-214
AKW01907.2|3539486_3540176_-	DNA transfer protein	NA	B9UDK9	Salmonella_phage	92.6	4.3e-93
AKW01906.2|3540178_3540634_-	DUF2824 family protein	NA	B8K1I4	Salmonella_phage	98.7	2.0e-86
AKW01905.2|3540633_3541272_-|tail	phage tail protein	tail	A0A088CPT1	Enterobacteria_phage	96.2	4.2e-87
AKW01904.2|3541275_3542694_-	hypothetical protein	NA	A0A2D1GM00	Escherichia_phage	98.3	1.5e-273
AKW01903.2|3542694_3543195_-	recombinase RmuC	NA	G8EYJ2	Enterobacteria_phage	97.6	3.6e-89
AKW01902.1|3543172_3543409_-	hypothetical protein	NA	A0A2D1GLK1	Escherichia_phage	78.4	1.1e-24
AKW01901.2|3543453_3544749_-|coat	coat protein	coat	A0A2D1GLV2	Escherichia_phage	98.8	1.8e-241
AKW01900.2|3544748_3545660_-	scaffolding protein	NA	A0A2D1GLN7	Escherichia_phage	99.3	5.4e-160
AKW01899.2|3545673_3547839_-|portal	portal protein	portal	A0A2D1GLJ6	Escherichia_phage	99.6	0.0e+00
AKW01898.2|3547839_3549339_-|terminase	terminase	terminase	G5DA96	Enterobacteria_phage	99.6	9.1e-306
AKW04935.1|3549316_3549805_-	DNA-packaging protein	NA	A0A0M3ULC0	Salmonella_phage	99.4	5.0e-88
AKW01896.1|3549840_3550083_-	DUF2560 family protein	NA	A5VW77	Enterobacteria_phage	100.0	1.3e-36
AXQ03622.1|3550573_3551062_-	GIY-YIG nuclease family protein	NA	K7P7S3	Enterobacteria_phage	98.8	2.7e-86
AKW04934.2|3551267_3551705_-|lysis	lysis protein	lysis	K7P710	Enterobacteria_phage	97.9	2.9e-71
AXQ03623.1|3551701_3552178_-	lysozyme	NA	K7PKV2	Enterobacteria_phage	98.7	1.6e-86
AXQ03624.1|3552161_3552485_-|holin	phage holin, lambda family	holin	G5DA93	Enterobacteria_phage	100.0	1.3e-52
AXQ03625.1|3552945_3553464_-	DUF1133 family protein	NA	A0A1R3Y5U9	Salmonella_virus	97.1	1.6e-92
AKW01891.2|3553460_3553640_-	hypothetical protein	NA	A0A1V0E5I7	Salmonella_phage	98.3	1.6e-23
AKW01890.2|3553620_3553824_-	protein ninH	NA	A0A075B8J4	Enterobacteria_phage	100.0	7.2e-33
AKW01889.1|3553820_3554216_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0M4REJ2	Salmonella_phage	98.5	3.4e-71
AKW01888.2|3554212_3554509_-	hypothetical protein	NA	A0A0M3ULJ7	Salmonella_phage	98.9	7.5e-47
AKW01887.2|3554471_3554648_-	NinF family protein	NA	A0A0M4S6T3	Salmonella_phage	94.8	1.9e-26
AXQ03626.1|3554644_3554827_-	NinE family protein	NA	C6ZR57	Salmonella_phage	100.0	5.7e-29
AKW01886.2|3554963_3555836_-	hypothetical protein	NA	A0A0K2FIH3	Escherichia_phage	99.7	3.5e-177
AKW01885.2|3555832_3556291_-	recombination protein NinB	NA	K7PGZ3	Enterobacteria_phage	98.6	1.4e-79
AXQ03627.1|3556346_3556625_-	hypothetical protein	NA	B9UDH9	Salmonella_phage	90.2	2.8e-43
AXQ03628.1|3556625_3558506_-	bifunctional DNA primase/helicase	NA	I6S1U6	Salmonella_phage	98.6	0.0e+00
AXQ03629.1|3558613_3559462_-	replication protein	NA	C6ZR51	Salmonella_phage	99.3	7.0e-154
AXQ03630.1|3559630_3559921_-	hypothetical protein	NA	I6RSP4	Salmonella_phage	100.0	2.4e-45
AXQ03631.1|3560029_3560245_-	XRE family transcriptional regulator	NA	Q716D6	Shigella_phage	69.0	1.1e-18
AXQ03788.1|3560345_3560978_+	helix-turn-helix domain-containing protein	NA	A0A1I9KG86	Aeromonas_phage	43.0	2.8e-30
AXQ03632.1|3561347_3561650_+	regulator	NA	A0A0M3ULJ5	Salmonella_phage	96.0	5.9e-47
AXQ03633.1|3561730_3561952_+	hypothetical protein	NA	A0A2H4FRY7	Salmonella_phage	97.3	5.3e-37
AXQ03634.1|3562078_3562336_+	hypothetical protein	NA	A0A2H4FRY7	Salmonella_phage	98.0	1.5e-22
AXQ03635.1|3562404_3562605_+	hypothetical protein	NA	A0A2H4FQS9	Salmonella_phage	100.0	1.6e-32
AXQ03636.1|3562796_3562970_+|protease	protease FtsH-inhibitory lysogeny factor CIII	protease	Q76H38	Enterobacteria_phage	100.0	2.6e-23
AKW01876.1|3562950_3563139_+	protein kil	NA	I6S647	Salmonella_phage	100.0	3.7e-31
AKW01874.2|3563268_3563976_+	recombinase	NA	A0A192Y857	Salmonella_phage	94.5	4.1e-131
AXQ03637.1|3563976_3564483_+	single-stranded DNA-binding protein	NA	C6ZR36	Salmonella_phage	92.3	1.1e-85
AXQ03638.1|3564491_3565040_+	3'-5' exoribonuclease	NA	C6ZR35	Salmonella_phage	95.6	5.8e-101
AXQ03639.1|3565057_3565351_+	DUF2856 family protein	NA	A0A1V0E5L7	Salmonella_phage	57.7	1.9e-21
AXQ03640.1|3565361_3565538_+	DUF2737 family protein	NA	K7PL43	Enterobacteria_phage	93.1	3.4e-23
AXQ03641.1|3565524_3566151_+	HNH endonuclease	NA	K7PHS8	Enterobacteria_phage	97.9	8.1e-107
AXQ03642.1|3566147_3566525_+	Eae protein	NA	I6R9B7	Salmonella_phage	94.3	4.2e-58
AXQ03643.1|3566521_3566755_+	hypothetical protein	NA	S4TVX5	Salmonella_phage	47.7	1.2e-12
AXQ03644.1|3566751_3567273_+	DUF262 domain-containing protein	NA	Q8HAA5	Salmonella_phage	100.0	3.1e-96
AKW01867.2|3567269_3567731_+	hypothetical protein	NA	NA	NA	NA	NA
AXQ03645.1|3567727_3568903_+	DUF551 domain-containing protein	NA	A0A1U9HZ41	Salmonella_phage	95.0	4.2e-48
AKW01863.2|3568973_3569609_+	Eac protein	NA	A0A075B8I7	Enterobacteria_phage	89.1	2.5e-108
AXQ03646.1|3569611_3569962_+	DNA-binding protein	NA	A0A1R3Y5Z5	Salmonella_virus	98.3	3.2e-60
AXQ03789.1|3570333_3571002_+|integrase	site-specific integrase	integrase	A0A220NQU7	Salmonella_phage	99.1	2.3e-128
AKW03852.2|3571207_3572458_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	48.2	1.2e-98
3571017:3571062	attR	TGGTGCCGATAATAGGAGTCGAACCTACGACCTTCGCATTACGAAT	NA	NA	NA	NA
AKW03853.1|3572469_3573573_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
AKW03854.2|3573854_3574907_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.2	4.8e-112
>prophage 8
CP012344	Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708, complete genome	4752095	4337696	4384662	4752095	tail,plate,tRNA	Burkholderia_phage(42.86%)	49	NA	NA
AKW04498.2|4337696_4338695_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
AKW04499.2|4338782_4340093_-	conjugal transfer protein	NA	NA	NA	NA	NA
AKW04500.1|4340339_4340855_+	transcriptional regulator Zur	NA	NA	NA	NA	NA
AKW04501.1|4340954_4341164_-	CsbD family protein	NA	NA	NA	NA	NA
AKW04502.2|4341185_4341299_-	hypothetical protein	NA	NA	NA	NA	NA
AKW04503.2|4341295_4342621_-	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
AKW04504.1|4342799_4343408_-	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
AKW04505.1|4343516_4343885_-	diacylglycerol kinase	NA	NA	NA	NA	NA
AKW04506.2|4344055_4346476_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA	NA
AKW04507.2|4346574_4347447_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
AKW04508.2|4347460_4347958_-	chorismate--pyruvate lyase	NA	NA	NA	NA	NA
AKW04509.1|4348138_4349056_-	maltose operon protein MalM	NA	NA	NA	NA	NA
AKW04510.2|4349219_4350578_-	maltoporin	NA	NA	NA	NA	NA
AKW04511.1|4350666_4351776_-	maltose/maltodextrin import ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
AKW04512.1|4352137_4353328_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
AKW04513.1|4353459_4355004_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
AKW04514.2|4355018_4355909_+	maltose ABC transporter permease	NA	NA	NA	NA	NA
AKW04515.2|4356074_4356485_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
AKW04516.2|4356627_4358724_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
AKW04518.2|4359452_4360091_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
AKW04519.1|4360154_4360397_-	outer membrane protein	NA	NA	NA	NA	NA
AKW04520.2|4360844_4362494_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
AKW04521.2|4362838_4364188_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
AKW04522.2|4364319_4364667_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	1.7e-21
AKW04523.1|4365241_4365529_+	hypothetical protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
AKW04524.2|4365531_4366137_+	lytic transglycosylase domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	60.4	8.4e-61
AKW04525.2|4366149_4366464_+	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	48.2	8.3e-20
AXQ03713.1|4366622_4367078_+	hypothetical protein	NA	NA	NA	NA	NA
AKW04526.2|4367074_4367272_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
AKW04527.2|4367261_4368689_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	70.7	4.0e-194
AKW04528.2|4368688_4369213_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
AKW04529.2|4369264_4369582_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
AXQ03714.1|4369541_4369670_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
AKW04531.2|4372120_4373074_+	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	51.5	7.9e-37
AKW05046.2|4373073_4373283_+	hypothetical protein	NA	A4JWL2	Burkholderia_virus	58.8	2.6e-17
AKW04532.2|4373270_4374314_+	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.1	1.2e-75
AKW04533.2|4374323_4375046_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
AXQ03715.1|4375054_4375297_+	hypothetical protein	NA	NA	NA	NA	NA
AKW04534.2|4375372_4375735_+	GtrA family protein	NA	I1TED9	Salmonella_phage	70.8	1.2e-43
AKW04535.2|4375731_4376661_+	glycosyltransferase	NA	S5FKN0	Shigella_phage	83.4	2.0e-149
AXQ03716.1|4376660_4377011_+	hypothetical protein	NA	NA	NA	NA	NA
AKW04536.2|4377026_4378208_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	27.6	8.3e-28
AKW04537.1|4378371_4378731_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
AKW04538.2|4378721_4379837_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	52.2	3.1e-101
AKW04539.1|4379829_4380462_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
AXQ03717.1|4380464_4382123_+|tail	phage tail protein	tail	A0A0M3ULH6	Salmonella_phage	40.5	1.8e-52
AXQ03718.1|4382129_4382744_+	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
AKW04542.2|4382740_4383196_+	hypothetical protein	NA	NA	NA	NA	NA
AKW04543.2|4383933_4384662_+	hypothetical protein	NA	A0A292GAQ8	Xanthomonas_phage	28.2	4.6e-13
>prophage 1
CP012345	Salmonella enterica subsp. enterica serovar Choleraesuis str. ATCC 10708 plasmid pCFSAN000679_01, complete sequence	49584	34135	41039	49584	transposase	Escherichia_phage(33.33%)	8	NA	NA
AKW05122.2|34135_34558_+	protein SamA	NA	A0A1W6JNS2	Morganella_phage	51.6	1.0e-28
AKW05121.2|34557_35832_+	translesion error-prone DNA polymerase V subunit UmuC	NA	F1C5A5	Cronobacter_phage	63.7	4.7e-154
AKW05120.2|35913_36891_-	ParB/RepB/Spo0J family partition protein	NA	A0A1B0V750	Salmonella_phage	53.2	5.2e-84
AKW05119.1|36887_38093_-	ParA family protein	NA	A0A077SL49	Escherichia_phage	69.3	1.5e-162
AKW05118.2|38507_39449_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	54.3	2.0e-72
AXQ03826.1|39480_40047_-	DUF2913 family protein	NA	NA	NA	NA	NA
AXQ03827.1|40103_40439_-	hypothetical protein	NA	NA	NA	NA	NA
AXQ03837.1|40622_41039_-	hypothetical protein	NA	O64348	Escherichia_phage	42.9	8.2e-07
