assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_000486815.2_ASM48681v2	CP019197	Salmonella enterica subsp. enterica serovar Oranienburg str. 0250 strain CFSAN001285 chromosome, complete genome	2	169986-170068	2	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,csa3,DEDDh,DinG	Orphan	CGCTTATCGGGCCTACCGCATTGATAT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,csa3,DEDDh,DinG	NA|70aa|up_8|CP019197.1_158694_158904_+,NA	NA|121aa|up_9|CP019197.1_158041_158404_-	PRK11020, PRK11020, YibL family ribosome-associated protein	NA|70aa|up_8|CP019197.1_158694_158904_+	NA	NA|197aa|up_7|CP019197.1_158913_159504_-	PRK11001, mtlR, MltR family transcriptional regulator	NA|383aa|up_6|CP019197.1_159500_160649_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|638aa|up_5|CP019197.1_160787_162701_-	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|203aa|up_4|CP019197.1_163176_163785_+	PRK10357, PRK10357, putative glutathione S-transferase; Provisional	NA|464aa|up_3|CP019197.1_163883_165275_+	PRK04311, PRK04311, selenocysteine synthase; Provisional	NA|617aa|up_2|CP019197.1_165271_167122_+	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional	NA|294aa|up_1|CP019197.1_167369_168251_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|513aa|up_0|CP019197.1_168419_169958_+	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like	NA|652aa|down_0|CP019197.1_170187_172143_-	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown]	NA|272aa|down_1|CP019197.1_172406_173222_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|232aa|down_2|CP019197.1_173370_174066_-	PRK12347, sgbE, L-ribulose-5-phosphate 4-epimerase; Reviewed	NA|287aa|down_3|CP019197.1_174059_174920_-	PRK13210, PRK13210, L-ribulose-5-phosphate 3-epimerase	NA|217aa|down_4|CP019197.1_174924_175575_-	PRK13305, sgbH, 3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA|499aa|down_5|CP019197.1_175571_177068_-	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|329aa|down_6|CP019197.1_177071_178058_-	cd13679, PBP2_TRAP_YiaO_like, Substrate-binding domain of 2,3-diketo-L-gulonate-binding Tripartite ATP-independent  Periplasmic transport system and related proteins; the type 2 periplasmic-binding protein fold	NA|426aa|down_7|CP019197.1_178069_179347_-	PRK15060, PRK15060, 2,3-diketo-L-gulonate transporter large permease YiaN	NA|158aa|down_8|CP019197.1_179349_179823_-	PRK09877, PRK09877, 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional	NA|311aa|down_9|CP019197.1_179961_180894_-	pfam16154, DUF4862, Domain of unknown function (DUF4862)
GCA_000486815.2_ASM48681v2	CP019197	Salmonella enterica subsp. enterica serovar Oranienburg str. 0250 strain CFSAN001285 chromosome, complete genome	3	920116-920693	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,9,9	9	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,csa3,DEDDh,DinG	NA,NA|57aa|down_2|CP019197.1_921968_922139_+	NA|919aa|up_9|CP019197.1_907098_909855_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_8|CP019197.1_909912_911208_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|752aa|up_7|CP019197.1_911259_913515_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_6|CP019197.1_913577_913934_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_5|CP019197.1_913899_914196_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|51aa|up_4|CP019197.1_914205_914358_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|CP019197.1_914965_915766_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP019197.1_915993_917631_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP019197.1_917713_919012_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP019197.1_919147_919819_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP019197.1_920790_921588_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP019197.1_921677_922040_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP019197.1_921968_922139_+	NA	NA|600aa|down_3|CP019197.1_922475_924275_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP019197.1_924274_925987_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|CP019197.1_926062_926797_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_6|CP019197.1_926884_927838_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_7|CP019197.1_928281_930945_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|down_8|CP019197.1_930956_932516_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|183aa|down_9|CP019197.1_932512_933061_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2
GCA_000486815.2_ASM48681v2	CP019197	Salmonella enterica subsp. enterica serovar Oranienburg str. 0250 strain CFSAN001285 chromosome, complete genome	4	936829-938628	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	28,29,29	29	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,csa3,DEDDh,DinG	NA,NA	NA|245aa|up_9|CP019197.1_926062_926797_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|CP019197.1_926884_927838_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|CP019197.1_928281_930945_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|up_6|CP019197.1_930956_932516_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|183aa|up_5|CP019197.1_932512_933061_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|CP019197.1_933074_934133_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|CP019197.1_934143_934890_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|CP019197.1_934871_935522_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|CP019197.1_935518_936439_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|CP019197.1_936438_936732_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|CP019197.1_938642_939689_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP019197.1_939939_940848_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP019197.1_940857_942297_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP019197.1_942283_942889_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP019197.1_942906_943263_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP019197.1_943453_943765_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP019197.1_943783_944494_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP019197.1_944493_944973_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP019197.1_944969_946019_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP019197.1_945999_946761_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
