assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCA_000240905.3_ASM24090v3	CP019186	Salmonella enterica subsp. enterica serovar Pomona str. ATCC 10729 chromosome, complete genome	2	913074-913773	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,PD-DExK,WYL,csa3,DEDDh,DinG	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,11,11	11	Unclear	cas3,PD-DExK,WYL,csa3,DEDDh,DinG	NA,NA|57aa|down_2|CP019186.1_915046_915217_+	NA|919aa|up_9|CP019186.1_900057_902814_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_8|CP019186.1_902871_904167_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|CP019186.1_904218_906453_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_6|CP019186.1_906537_906894_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_5|CP019186.1_906859_907156_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|51aa|up_4|CP019186.1_907165_907318_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|CP019186.1_907923_908724_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|CP019186.1_908951_910589_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|CP019186.1_910671_911970_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|CP019186.1_912105_912777_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|CP019186.1_913870_914668_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|CP019186.1_914755_915118_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|down_2|CP019186.1_915046_915217_+	NA	NA|600aa|down_3|CP019186.1_915553_917353_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_4|CP019186.1_917352_919065_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_5|CP019186.1_919140_919875_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_6|CP019186.1_919962_920916_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|526aa|down_7|CP019186.1_921299_922877_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|349aa|down_8|CP019186.1_922993_924040_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_9|CP019186.1_924290_925199_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD
GCA_000240905.3_ASM24090v3	CP019186	Salmonella enterica subsp. enterica serovar Pomona str. ATCC 10729 chromosome, complete genome	3	922890-922977	3	CRISPRCasFinder	no	cas3	cas3,PD-DExK,WYL,csa3,DEDDh,DinG	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAAC	27	0	0	NA	NA	I-E	1	1	Unclear	cas3,PD-DExK,WYL,csa3,DEDDh,DinG	NA|57aa|up_5|CP019186.1_915046_915217_+,NA	NA|433aa|up_9|CP019186.1_910671_911970_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_8|CP019186.1_912105_912777_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|up_7|CP019186.1_913870_914668_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|up_6|CP019186.1_914755_915118_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|57aa|up_5|CP019186.1_915046_915217_+	NA	NA|600aa|up_4|CP019186.1_915553_917353_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|CP019186.1_917352_919065_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|CP019186.1_919140_919875_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_1|CP019186.1_919962_920916_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|526aa|up_0|CP019186.1_921299_922877_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|349aa|down_0|CP019186.1_922993_924040_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|CP019186.1_924290_925199_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|CP019186.1_925208_926648_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|CP019186.1_926634_927240_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|CP019186.1_927257_927614_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|CP019186.1_927804_928116_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|CP019186.1_928134_928845_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|CP019186.1_928844_929324_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|CP019186.1_929320_930370_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|CP019186.1_930350_931112_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCA_000240905.3_ASM24090v3	CP019186	Salmonella enterica subsp. enterica serovar Pomona str. ATCC 10729 chromosome, complete genome	4	3171163-3171252	4	CRISPRCasFinder	no		cas3,PD-DExK,WYL,csa3,DEDDh,DinG	Orphan	AAACAGTACTCGTCCGTAGGCCGGATAAGACG	32	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,csa3,DEDDh,DinG	NA|74aa|up_0|CP019186.1_3170904_3171126_+,NA|36aa|down_5|CP019186.1_3176913_3177021_-	NA|265aa|up_9|CP019186.1_3160151_3160946_+	COG3735, COG3735, Uncharacterized protein conserved in bacteria [Function unknown]	NA|160aa|up_8|CP019186.1_3161147_3161627_+	PRK10670, PRK10670, Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK	NA|551aa|up_7|CP019186.1_3161743_3163396_-	PRK09558, ushA, bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed	NA|407aa|up_6|CP019186.1_3163568_3164789_+	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|559aa|up_5|CP019186.1_3165003_3166680_+	PRK10669, PRK10669, putative cation:proton antiport protein; Provisional	NA|435aa|up_4|CP019186.1_3166728_3168033_-	PRK15074, PRK15074, inosine/guanosine kinase; Provisional	NA|324aa|up_3|CP019186.1_3168185_3169157_+	PRK10162, PRK10162, acetyl esterase	NA|321aa|up_2|CP019186.1_3169153_3170116_-	PRK00035, hemH, ferrochelatase; Reviewed	NA|215aa|up_1|CP019186.1_3170343_3170988_-	PRK00279, adk, adenylate kinase; Reviewed	NA|74aa|up_0|CP019186.1_3170904_3171126_+	NA	NA|625aa|down_0|CP019186.1_3171287_3173162_-	PRK05218, PRK05218, heat shock protein 90; Provisional	NA|202aa|down_1|CP019186.1_3173272_3173878_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|110aa|down_2|CP019186.1_3173877_3174207_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|643aa|down_3|CP019186.1_3174252_3176181_-	PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated	NA|184aa|down_4|CP019186.1_3176294_3176846_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|36aa|down_5|CP019186.1_3176913_3177021_-	NA	NA|126aa|down_6|CP019186.1_3176998_3177376_-	PRK10527, PRK10527, DUF454 family protein	NA|176aa|down_7|CP019186.1_3177444_3177972_+	PRK10093, PRK10093, primosomal replication protein N''; Provisional	NA|56aa|down_8|CP019186.1_3177985_3178153_+	PRK11038, PRK11038, hypothetical protein; Provisional	NA|308aa|down_9|CP019186.1_3178222_3179146_+	pfam04754, Transposase_31, Putative transposase, YhgA-like
