The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
CP000410	Streptococcus pneumoniae D39, complete genome	2046116	41901	53357	2046116		Synechococcus_phage(33.33%)	7	NA	NA
ABJ54806.1|41901_44055_+	competence factor transporting ATP-binding/permease protein ComA	NA	W8CYL7	Bacillus_phage	28.0	1.0e-44
ABJ53997.1|44067_45417_+	competence factor transport protein ComB	NA	NA	NA	NA	NA
ABJ54486.1|45586_46294_+	phosphoribosylaminoimidazole-succinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	38.8	6.7e-41
ABJ54799.1|46495_50221_+	phosphoribosylformylglycinamidine synthase, putative	NA	A6N228	Microbacterium_phage	25.8	2.1e-37
ABJ54240.1|50313_51756_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.4	2.6e-55
ABJ54031.1|51792_52815_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	1.6e-64
ABJ54098.1|52811_53357_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	7.4e-24
>prophage 2
CP000410	Streptococcus pneumoniae D39, complete genome	2046116	325843	331236	2046116		Escherichia_phage(33.33%)	6	NA	NA
ABJ54329.1|325843_327082_+	UDP-glucose 6-dehydrogenase, putative	NA	M1I6D5	Acanthocystis_turfacea_Chlorella_virus	49.9	3.3e-104
ABJ55443.1|327110_327716_+	UDP-galactopyranose mutase	NA	E4ZFQ1	Streptococcus_phage	62.6	1.7e-69
ABJ54347.1|327793_328663_+	glucose-1-phosphate thymidylyltransferase	NA	K7QKA7	Escherichia_phage	64.6	2.2e-102
ABJ55481.1|328663_329257_+	dTDP-4-dehydrorhamnose 3,5-epimerase, putative	NA	H9NC63	Sphingomonas_phage	33.1	3.9e-10
ABJ55108.1|329269_330319_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	44.5	8.3e-72
ABJ54208.1|330384_331236_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	35.4	1.5e-26
>prophage 3
CP000410	Streptococcus pneumoniae D39, complete genome	2046116	824611	883695	2046116	protease,holin,transposase,tRNA	Streptococcus_phage(40.91%)	60	NA	NA
ABJ54730.1|824611_825487_-|transposase	IS1239, transposase, putative	transposase	H7BWC8	unidentified_phage	31.6	6.8e-27
ABJ53739.1|825719_825833_-	hypothetical protein	NA	NA	NA	NA	NA
ABJ55263.1|826193_827669_+	lysine decarboxylase	NA	NA	NA	NA	NA
ABJ54021.1|828605_829466_+	spermidine synthase	NA	NA	NA	NA	NA
ABJ55062.1|829462_830722_+	saccharopine dehydrogenase	NA	NA	NA	NA	NA
ABJ53691.1|830721_831849_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA	NA
ABJ54341.1|831845_832931_+	agmatine deiminase	NA	M1HES8	Acanthocystis_turfacea_Chlorella_virus	47.2	7.7e-89
ABJ55190.1|832940_833816_+	hydrolase, carbon-nitrogen family protein	NA	M1H5W0	Paramecium_bursaria_Chlorella_virus	49.7	4.2e-77
ABJ54304.1|833996_834806_-	Cof family protein	NA	NA	NA	NA	NA
ABJ55011.1|835352_836024_+|protease	CAAX amino terminal protease family protein	protease	NA	NA	NA	NA
ABJ53965.1|836265_837174_+	transcriptional regulator, LysR family protein	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	3.1e-06
ABJ54833.1|837170_837632_+	signal peptidase II	NA	NA	NA	NA	NA
ABJ53694.1|837621_838509_+	ribosomal large subunit pseudouridine synthase D	NA	NA	NA	NA	NA
ABJ54521.1|838511_840395_+|holin	choline binding protein E	holin	Q332B9	Clostridium_botulinum_C_phage	22.1	4.0e-08
ABJ55060.1|840495_841605_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	1.9e-114
ABJ54450.1|841614_842877_+	gamma-glutamyl phosphate reductase	NA	A0A1X9I5D4	Streptococcus_phage	64.5	2.5e-139
ABJ54753.1|842880_843678_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.6	2.7e-59
ABJ54857.1|843793_844432_+	thymidylate kinase	NA	M1PSC7	Streptococcus_phage	68.1	1.3e-75
ABJ54011.1|844428_845319_+	DNA polymerase III, delta prime subunit	NA	M1NSC1	Streptococcus_phage	51.7	4.9e-73
ABJ54628.1|845358_845676_+	hypothetical protein	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
ABJ53815.1|845678_846548_+	conserved hypothetical protein TIGR00096	NA	M1PLC5	Streptococcus_phage	76.1	2.7e-116
ABJ55513.1|846774_847293_+	hypothetical protein	NA	NA	NA	NA	NA
ABJ54711.1|847401_848049_+	hypothetical protein	NA	A0A2P0VK56	Streptococcus_phage	33.7	7.0e-13
ABJ54315.1|848037_848427_-|transposase	IS1381, transposase OrfB	transposase	NA	NA	NA	NA
ABJ54582.1|848452_848842_-|transposase	IS1381, transposase OrfA	transposase	NA	NA	NA	NA
ABJ54938.1|849335_850670_+|tRNA	tRNA uridine 5-carboxymethylaminomethyl modification enzyme gid	tRNA	NA	NA	NA	NA
ABJ53606.1|850753_851491_+	uridylate kinase	NA	NA	NA	NA	NA
ABJ55153.1|851499_852057_+	ribosome recycling factor	NA	NA	NA	NA	NA
ABJ53881.1|852077_852971_+	hypothetical protein	NA	NA	NA	NA	NA
ABJ55364.1|852979_853195_+	hypothetical protein	NA	NA	NA	NA	NA
ABJ54324.1|853280_854249_+	PhoH family protein	NA	W8D063	Erwinia_phage	47.9	5.9e-48
ABJ54550.1|854441_854942_+	acetyltransferase, GNAT family protein	NA	NA	NA	NA	NA
ABJ55419.1|854944_855172_+	hypothetical protein	NA	NA	NA	NA	NA
ABJ54291.1|856859_857429_+	acetyltransferase, GNAT family protein	NA	NA	NA	NA	NA
ABJ54636.1|857496_858147_+	competence protein CelA	NA	NA	NA	NA	NA
ABJ53796.1|858130_860371_+	competence protein CelB	NA	M1PSD2	Streptococcus_phage	51.6	2.8e-45
ABJ54370.1|860769_861246_+	ABC transporter, ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.8	1.2e-09
ABJ55465.1|861360_862542_+	membrane protein, putative	NA	NA	NA	NA	NA
ABJ53940.1|862821_863379_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	32.1	2.5e-11
ABJ54754.1|863411_863612_+	ribosomal protein L35	NA	NA	NA	NA	NA
ABJ54841.1|863663_864023_+	ribosomal protein L20	NA	NA	NA	NA	NA
ABJ54008.1|864080_864461_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
ABJ54272.1|864710_865511_+	dihydroorotate dehydrogenase electron transfer subunit	NA	NA	NA	NA	NA
ABJ55353.1|865521_866460_+	dihydroorotate dehydrogenase, catalytic subunit	NA	NA	NA	NA	NA
ABJ55408.1|866558_868667_+	endo-beta-N-acetylglucosaminidase precursor, putative	NA	A0A143FPM9	Bacillus_phage	42.6	9.0e-25
ABJ54581.1|868727_870383_-	adherence and virulence protein A	NA	A0A1J0F9J4	Only_Syngen_Nebraska_virus	36.5	4.7e-05
ABJ54640.1|870487_870985_+	conserved hypothetical protein TIGR00043	NA	NA	NA	NA	NA
ABJ53910.1|870965_871361_+	diacylglycerol kinase	NA	NA	NA	NA	NA
ABJ55058.1|871377_872277_+	GTP-binding protein Era	NA	NA	NA	NA	NA
ABJ54221.1|872325_873150_+	formamidopyrimidine-DNA glycosylase	NA	G3MA33	Bacillus_virus	34.5	1.6e-30
ABJ55293.1|873149_873755_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
ABJ54479.1|873741_874941_+	multi-drug resistance efflux pump	NA	NA	NA	NA	NA
ABJ55141.1|875129_875363_+	preprotein translocase, SecG subunit	NA	NA	NA	NA	NA
ABJ54232.1|875464_877819_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	40.6	1.4e-90
ABJ54746.1|877781_878249_+	SsrA-binding protein	NA	W5RAM5	Staphylococcus_phage	60.1	4.2e-44
ABJ53903.1|878264_879125_+	tellurite resistance protein TehB	NA	NA	NA	NA	NA
ABJ54554.1|879197_880151_+	competence protein CoiA	NA	NA	NA	NA	NA
ABJ53708.1|880169_881972_+	oligoendopeptidase F	NA	NA	NA	NA	NA
ABJ54314.1|881973_882687_+	O-methyltransferase	NA	NA	NA	NA	NA
ABJ55379.1|882753_883695_+|protease	protease maturation protein, putative	protease	NA	NA	NA	NA
>prophage 4
CP000410	Streptococcus pneumoniae D39, complete genome	2046116	985680	1048680	2046116	protease,transposase,integrase	Streptococcus_phage(30.77%)	51	1005346:1005360	1049721:1049735
ABJ53709.1|985680_986079_+|transposase	IS1381, transposase OrfA	transposase	NA	NA	NA	NA
ABJ54882.1|986093_986483_+|transposase	IS1381, transposase OrfB	transposase	NA	NA	NA	NA
ABJ54010.1|986673_988965_+	ATP-dependent DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.1	9.5e-129
ABJ54908.1|989007_989688_+	DNA repair protein RadC	NA	NA	NA	NA	NA
ABJ55311.1|989684_990374_-	class I glutamine amidotransferase, putative	NA	NA	NA	NA	NA
ABJ53704.1|990391_991033_-	hypothetical protein	NA	NA	NA	NA	NA
ABJ54583.1|991115_991367_-	hypothetical protein	NA	NA	NA	NA	NA
ABJ53869.1|991338_991686_-	hypothetical protein	NA	NA	NA	NA	NA
ABJ53751.1|991690_992806_-	aminotransferase, class V	NA	H7BUW1	unidentified_phage	36.8	1.0e-27
ABJ55331.1|992815_993775_-	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	32.8	9.3e-38
ABJ54506.1|993887_994457_-	adenylate cyclase, putative	NA	NA	NA	NA	NA
ABJ54046.1|994584_995256_+	pyrophosphokinase family protein	NA	NA	NA	NA	NA
ABJ54161.1|995239_996058_+	inorganic polyphosphate/ATP-NAD kinase, putative	NA	NA	NA	NA	NA
ABJ54458.1|996054_996951_+	ribosomal large subunit pseudouridine synthase, RluD subfamily protein	NA	NA	NA	NA	NA
ABJ54586.1|996994_997969_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
ABJ54907.1|999729_1000029_-	conserved hypothetical protein TIGR00103	NA	NA	NA	NA	NA
ABJ55149.1|1000430_1001135_+	integral membrane protein	NA	NA	NA	NA	NA
ABJ55043.1|1001316_1001631_+	ribosomal protein L21	NA	NA	NA	NA	NA
ABJ53736.1|1001646_1001991_+	hypothetical protein	NA	NA	NA	NA	NA
ABJ53759.1|1002007_1002301_+	ribosomal protein L27	NA	NA	NA	NA	NA
ABJ54702.1|1002646_1002817_-	hypothetical protein	NA	NA	NA	NA	NA
ABJ54516.1|1002788_1002917_-	hypothetical protein	NA	NA	NA	NA	NA
ABJ55403.1|1003253_1004171_+	riboflavin biosynthesis protein RibF	NA	NA	NA	NA	NA
ABJ54318.1|1004263_1005112_-	membrane protein, putative	NA	M1Q1P6	Streptococcus_phage	46.5	1.4e-64
ABJ55472.1|1005253_1006093_+	DegV family protein	NA	NA	NA	NA	NA
1005346:1005360	attL	AATGATTGATAATGT	NA	NA	NA	NA
ABJ54501.1|1006198_1006474_+	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	66.3	9.2e-23
ABJ55070.1|1006899_1008801_+	ABC transporter, ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.5	1.5e-50
ABJ55078.1|1008803_1009667_+	transcriptional regulator MutR, putative	NA	NA	NA	NA	NA
ABJ53994.1|1009746_1010925_+	transporter, major facilitator family protein	NA	NA	NA	NA	NA
ABJ54766.1|1011017_1012976_+	DNA ligase, NAD-dependent	NA	A0A1W6DX16	Sphingobium_phage	35.9	1.2e-100
ABJ53658.1|1013087_1015367_+	pullulanase, type I	NA	NA	NA	NA	NA
ABJ53986.1|1015718_1015892_-	hypothetical protein	NA	NA	NA	NA	NA
ABJ54819.1|1015910_1017335_+	glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent	NA	NA	NA	NA	NA
ABJ55433.1|1017799_1019728_+	1,4-alpha-glucan branching enzyme	NA	NA	NA	NA	NA
ABJ54622.1|1019717_1020860_+	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA	NA
ABJ54557.1|1020849_1021989_+	glucose-1-phosphate adenylyltransferase, GlgD subunit	NA	NA	NA	NA	NA
ABJ54779.1|1021985_1023419_+	glycogen/starch synthase, ADP-glucose type	NA	NA	NA	NA	NA
ABJ53663.1|1024131_1025247_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	51.2	1.9e-74
ABJ55489.1|1025243_1025690_-	hypothetical protein	NA	NA	NA	NA	NA
ABJ55064.1|1025853_1027158_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	94.2	8.1e-234
ABJ54248.1|1027295_1027742_-|integrase	integrase/recombinase, phage integrase family protein	integrase	W6LMU7	Streptococcus_phage	74.5	5.5e-41
ABJ54147.1|1028138_1028489_-|transposase	IS630-Spn1, transposase Orf1	transposase	NA	NA	NA	NA
ABJ55254.1|1028989_1032289_+	ATP-dependent exonuclease RexB	NA	NA	NA	NA	NA
ABJ53740.1|1032285_1035936_+	exonuclease RexA	NA	G3MA40	Bacillus_virus	25.1	8.8e-20
ABJ55309.1|1036105_1037284_+	hypothetical protein	NA	NA	NA	NA	NA
ABJ54639.1|1037492_1043384_+|protease	immunoglobulin A1 protease precursor	protease	NA	NA	NA	NA
ABJ53742.1|1043842_1044694_+	GTP-binding protein	NA	NA	NA	NA	NA
ABJ54270.1|1044680_1045460_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	37.6	9.6e-25
ABJ55444.1|1045475_1047026_+	voltage-gated chloride channel family protein	NA	NA	NA	NA	NA
ABJ55258.1|1047218_1047332_-	hypothetical protein	NA	NA	NA	NA	NA
ABJ54460.1|1047609_1048680_+|integrase	integrase/recombinase, phage integrase family protein	integrase	A0A1B1IQT7	uncultured_Mediterranean_phage	29.9	3.1e-05
1049721:1049735	attR	AATGATTGATAATGT	NA	NA	NA	NA
>prophage 5
CP000410	Streptococcus pneumoniae D39, complete genome	2046116	1307053	1314072	2046116		Streptococcus_phage(42.86%)	12	NA	NA
ABJ54207.1|1307053_1307566_-	hypothetical protein	NA	A0A0N9SJ77	Staphylococcus_phage	32.4	1.4e-16
ABJ54661.1|1307659_1307782_-	hypothetical protein	NA	NA	NA	NA	NA
ABJ53807.1|1307857_1307971_+	hypothetical protein	NA	NA	NA	NA	NA
ABJ54406.1|1308294_1308906_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
ABJ55111.1|1308950_1309679_+	TrmH family RNA methyltransferase group 3	NA	NA	NA	NA	NA
ABJ55208.1|1309717_1310629_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.8	4.5e-90
ABJ54428.1|1310694_1310919_-	hypothetical protein	NA	NA	NA	NA	NA
ABJ55005.1|1310996_1311740_-	amino acid ABC transporter, ATP-binding protein	NA	W5SAS9	Pithovirus	27.4	1.6e-13
ABJ54243.1|1311739_1312540_-	amino acid ABC transporter, permease protein	NA	NA	NA	NA	NA
ABJ53882.1|1312697_1313054_-	ArsC family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
ABJ55006.1|1313047_1313578_-	methylated-DNA--protein-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	54.3	1.4e-46
ABJ53641.1|1313577_1314072_-	acetyltransferase, GNAT family protein	NA	M1PSC3	Streptococcus_phage	51.5	5.5e-42
>prophage 6
CP000410	Streptococcus pneumoniae D39, complete genome	2046116	1414145	1420899	2046116	protease	Streptococcus_phage(50.0%)	9	NA	NA
ABJ54627.1|1414145_1415114_+	pyridine nucleotide-disulfide oxidoreductase family protein	NA	Q9JRK7	Streptococcus_phage	99.2	1.1e-65
ABJ53810.1|1415147_1416059_-	putative BCR	NA	Q7AWZ3	Streptococcus_phage	99.7	1.5e-154
ABJ54751.1|1416055_1417033_-	hypothetical protein	NA	A1IMD5	Streptococcus_phage	99.7	4.4e-184
ABJ53642.1|1417029_1417920_-	hypothetical protein	NA	A0A0R8VB27	Thermobifida_phage	29.8	6.7e-06
ABJ54789.1|1417971_1418352_-	endoribonuclease L-PSP	NA	NA	NA	NA	NA
ABJ53689.1|1418362_1418950_-	GTP-binding protein	NA	NA	NA	NA	NA
ABJ55423.1|1418958_1420191_-|protease	ATP-dependent Clp protease, ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	4.2e-131
ABJ54340.1|1420222_1420393_-	hypothetical protein	NA	NA	NA	NA	NA
ABJ55262.1|1420392_1420899_-	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	43.8	1.0e-27
>prophage 7
CP000410	Streptococcus pneumoniae D39, complete genome	2046116	1662445	1669777	2046116		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
ABJ53871.1|1662445_1663147_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A2K9L1R4	Tupanvirus	35.7	4.6e-34
ABJ54210.1|1663569_1664529_+	iron-compound ABC transporter, permease protein	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	4.0e-57
ABJ55314.1|1664518_1665475_+	iron-compound ABC transporter, permease protein	NA	NA	NA	NA	NA
ABJ54253.1|1665471_1666224_+	iron-compound ABC transporter, ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.2	3.7e-13
ABJ53643.1|1666319_1667285_+	iron-compound ABC transporter, iron-compound-binding protein	NA	NA	NA	NA	NA
ABJ54493.1|1667509_1667752_-	conserved hypothetical protein TIGR00278	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	7.8e-18
ABJ54081.1|1667751_1668474_-	ribosomal large subunit pseudouridine synthase B	NA	NA	NA	NA	NA
ABJ54926.1|1668460_1669030_-	segregation and condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
ABJ54301.1|1669048_1669777_-	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	5.3e-09
>prophage 8
CP000410	Streptococcus pneumoniae D39, complete genome	2046116	2023773	2032527	2046116		Streptococcus_phage(33.33%)	9	NA	NA
ABJ55378.1|2023773_2024613_-	cobalt ABC transporter, ATP-binding protein CbiO1	NA	A0A2H4PQG7	Staphylococcus_phage	27.6	8.2e-14
ABJ54283.1|2024597_2025425_-	cobalt ABC transporter, ATP-binding protein CbiO2	NA	W8CYL7	Bacillus_phage	33.3	3.5e-17
ABJ55172.1|2025421_2025967_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
ABJ54044.1|2025977_2026799_-	hypothetical protein	NA	NA	NA	NA	NA
ABJ54920.1|2026840_2028124_-	peptidase, M16 family protein	NA	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	30.0	1.1e-17
ABJ53744.1|2028120_2029371_-	hypothetical protein	NA	A0A1X9I714	Streptococcus_phage	42.3	3.5e-93
ABJ53674.1|2029529_2029898_+	hypothetical protein	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
ABJ54836.1|2029900_2030998_+	recF protein	NA	NA	NA	NA	NA
ABJ54261.1|2031048_2032527_-	inosine-5'-monophosphate dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
