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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
JGVI01000042 Shewanella xiamenensis strain BC01 contig36, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000043 Shewanella xiamenensis strain BC01 contig37, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000026 Shewanella xiamenensis strain BC01 contig21, whole genome shotgun sequence 0 crisprs cas3 0 0 0 0
JGVI01000105 Shewanella xiamenensis strain BC01 contig93, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000012 Shewanella xiamenensis strain BC01 contig109, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000054 Shewanella xiamenensis strain BC01 contig47, whole genome shotgun sequence 0 crisprs DEDDh 0 0 0 0
JGVI01000086 Shewanella xiamenensis strain BC01 contig76, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000005 Shewanella xiamenensis strain BC01 contig102, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000071 Shewanella xiamenensis strain BC01 contig62, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000044 Shewanella xiamenensis strain BC01 contig38, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000089 Shewanella xiamenensis strain BC01 contig79, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000004 Shewanella xiamenensis strain BC01 contig101, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000035 Shewanella xiamenensis strain BC01 contig3, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000006 Shewanella xiamenensis strain BC01 contig103, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000038 Shewanella xiamenensis strain BC01 contig32, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000027 Shewanella xiamenensis strain BC01 contig22, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000029 Shewanella xiamenensis strain BC01 contig24, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000099 Shewanella xiamenensis strain BC01 contig88, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000069 Shewanella xiamenensis strain BC01 contig60, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000085 Shewanella xiamenensis strain BC01 contig75, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000109 Shewanella xiamenensis strain BC01 contig97, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000032 Shewanella xiamenensis strain BC01 contig27, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000066 Shewanella xiamenensis strain BC01 contig58, whole genome shotgun sequence 1 crisprs NA 0 0 0 0
JGVI01000068 Shewanella xiamenensis strain BC01 contig6, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000067 Shewanella xiamenensis strain BC01 contig59, whole genome shotgun sequence 0 crisprs cas3 0 0 0 0
JGVI01000059 Shewanella xiamenensis strain BC01 contig51, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000015 Shewanella xiamenensis strain BC01 contig111, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000064 Shewanella xiamenensis strain BC01 contig56, whole genome shotgun sequence 0 crisprs DEDDh 0 0 0 0
JGVI01000049 Shewanella xiamenensis strain BC01 contig42, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000019 Shewanella xiamenensis strain BC01 contig15, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000060 Shewanella xiamenensis strain BC01 contig52, whole genome shotgun sequence 0 crisprs DEDDh 0 0 0 0
JGVI01000107 Shewanella xiamenensis strain BC01 contig95, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000034 Shewanella xiamenensis strain BC01 contig29, whole genome shotgun sequence 0 crisprs cas3,WYL 0 0 1 2
JGVI01000108 Shewanella xiamenensis strain BC01 contig96, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000058 Shewanella xiamenensis strain BC01 contig50, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000028 Shewanella xiamenensis strain BC01 contig23, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000091 Shewanella xiamenensis strain BC01 contig80, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000097 Shewanella xiamenensis strain BC01 contig86, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000014 Shewanella xiamenensis strain BC01 contig110, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000018 Shewanella xiamenensis strain BC01 contig14, whole genome shotgun sequence 0 crisprs DEDDh 0 0 0 0
JGVI01000050 Shewanella xiamenensis strain BC01 contig43, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000079 Shewanella xiamenensis strain BC01 contig7, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000077 Shewanella xiamenensis strain BC01 contig68, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000078 Shewanella xiamenensis strain BC01 contig69, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000063 Shewanella xiamenensis strain BC01 contig55, whole genome shotgun sequence 0 crisprs DEDDh 0 0 0 0
JGVI01000021 Shewanella xiamenensis strain BC01 contig17, whole genome shotgun sequence 1 crisprs NA 0 0 0 0
JGVI01000003 Shewanella xiamenensis strain BC01 contig100, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000047 Shewanella xiamenensis strain BC01 contig40, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000075 Shewanella xiamenensis strain BC01 contig66, whole genome shotgun sequence 0 crisprs csa3 0 0 0 0
JGVI01000013 Shewanella xiamenensis strain BC01 contig11, whole genome shotgun sequence 0 crisprs RT 0 0 0 0
JGVI01000008 Shewanella xiamenensis strain BC01 contig105, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000084 Shewanella xiamenensis strain BC01 contig74, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000037 Shewanella xiamenensis strain BC01 contig31, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000083 Shewanella xiamenensis strain BC01 contig73, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000081 Shewanella xiamenensis strain BC01 contig71, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000002 Shewanella xiamenensis strain BC01 contig10, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000020 Shewanella xiamenensis strain BC01 contig16, whole genome shotgun sequence 1 crisprs NA 0 0 0 0
JGVI01000056 Shewanella xiamenensis strain BC01 contig49, whole genome shotgun sequence 0 crisprs NA 0 0 1 0
JGVI01000024 Shewanella xiamenensis strain BC01 contig2, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000052 Shewanella xiamenensis strain BC01 contig45, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000041 Shewanella xiamenensis strain BC01 contig35, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000062 Shewanella xiamenensis strain BC01 contig54, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000093 Shewanella xiamenensis strain BC01 contig82, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000072 Shewanella xiamenensis strain BC01 contig63, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000088 Shewanella xiamenensis strain BC01 contig78, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000092 Shewanella xiamenensis strain BC01 contig81, whole genome shotgun sequence 0 crisprs WYL 0 0 0 0
JGVI01000106 Shewanella xiamenensis strain BC01 contig94, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000087 Shewanella xiamenensis strain BC01 contig77, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000010 Shewanella xiamenensis strain BC01 contig107, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000110 Shewanella xiamenensis strain BC01 contig98, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000045 Shewanella xiamenensis strain BC01 contig39, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000025 Shewanella xiamenensis strain BC01 contig20, whole genome shotgun sequence 1 crisprs cas3 0 0 0 0
JGVI01000001 Shewanella xiamenensis strain BC01 contig1, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000017 Shewanella xiamenensis strain BC01 contig13, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000051 Shewanella xiamenensis strain BC01 contig44, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000061 Shewanella xiamenensis strain BC01 contig53, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000103 Shewanella xiamenensis strain BC01 contig91, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000094 Shewanella xiamenensis strain BC01 contig83, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000009 Shewanella xiamenensis strain BC01 contig106, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000057 Shewanella xiamenensis strain BC01 contig5, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000011 Shewanella xiamenensis strain BC01 contig108, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000039 Shewanella xiamenensis strain BC01 contig33, whole genome shotgun sequence 0 crisprs WYL,DinG 0 0 0 0
JGVI01000053 Shewanella xiamenensis strain BC01 contig46, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000030 Shewanella xiamenensis strain BC01 contig25, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000074 Shewanella xiamenensis strain BC01 contig65, whole genome shotgun sequence 0 crisprs NA 0 0 1 0
JGVI01000022 Shewanella xiamenensis strain BC01 contig18, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000098 Shewanella xiamenensis strain BC01 contig87, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000082 Shewanella xiamenensis strain BC01 contig72, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000033 Shewanella xiamenensis strain BC01 contig28, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000055 Shewanella xiamenensis strain BC01 contig48, whole genome shotgun sequence 0 crisprs cas3 0 0 0 0
JGVI01000090 Shewanella xiamenensis strain BC01 contig8, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000104 Shewanella xiamenensis strain BC01 contig92, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000007 Shewanella xiamenensis strain BC01 contig104, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000048 Shewanella xiamenensis strain BC01 contig41, whole genome shotgun sequence 0 crisprs DinG 0 0 0 0
JGVI01000046 Shewanella xiamenensis strain BC01 contig4, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000073 Shewanella xiamenensis strain BC01 contig64, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000031 Shewanella xiamenensis strain BC01 contig26, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000095 Shewanella xiamenensis strain BC01 contig84, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000080 Shewanella xiamenensis strain BC01 contig70, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000100 Shewanella xiamenensis strain BC01 contig89, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000040 Shewanella xiamenensis strain BC01 contig34, whole genome shotgun sequence 1 crisprs NA 0 0 0 0
JGVI01000076 Shewanella xiamenensis strain BC01 contig67, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000023 Shewanella xiamenensis strain BC01 contig19, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000065 Shewanella xiamenensis strain BC01 contig57, whole genome shotgun sequence 0 crisprs DEDDh 0 0 0 0
JGVI01000101 Shewanella xiamenensis strain BC01 contig9, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000036 Shewanella xiamenensis strain BC01 contig30, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000096 Shewanella xiamenensis strain BC01 contig85, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000016 Shewanella xiamenensis strain BC01 contig12, whole genome shotgun sequence 0 crisprs csa3 0 0 0 0
JGVI01000111 Shewanella xiamenensis strain BC01 contig99, whole genome shotgun sequence 0 crisprs NA 0 0 0 0
JGVI01000070 Shewanella xiamenensis strain BC01 contig61, whole genome shotgun sequence 0 crisprs NA 0 0 0 0

Results visualization

1. JGVI01000066
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
JGVI01000066_1 94865-95154 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. JGVI01000025
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
JGVI01000025_1 57683-57790 Unclear NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. JGVI01000021
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
JGVI01000021_1 18686-18836 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. JGVI01000040
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
JGVI01000040_1 4366-4533 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
5. JGVI01000074
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 58470 : 65938 7 Staphylococcus_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
6. JGVI01000020
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
JGVI01000020_1 1235-1320 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
7. JGVI01000034
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 86567 : 122328 46 Pseudoalteromonas_phage(57.58%) portal,integrase,tail,capsid attL 88008:88056|attR 121406:121454
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
JGVI01000034.1|KEK29119.1|98657_98951_+|hypothetical-protein 98657_98951_+ 97 aa aa AcrIF10 NA JGVI01000034.1_98991_99354_+ 86567-122328 NA
JGVI01000034.1|KEK29118.1|98210_98567_+|hypothetical-protein 98210_98567_+ 118 aa aa NA NA JGVI01000034.1_98991_99354_+ 86567-122328 NA
8. JGVI01000056
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 10896 : 21673 14 Yellowstone_lake_phycodnavirus(11.11%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage